View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12283_low_1 (Length: 356)

Name: NF12283_low_1
Description: NF12283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12283_low_1
NF12283_low_1
[»] chr3 (2 HSPs)
chr3 (53-345)||(36120431-36120727)
chr3 (134-201)||(41048321-41048388)
[»] chr2 (1 HSPs)
chr2 (53-345)||(40566031-40566328)
[»] chr8 (1 HSPs)
chr8 (134-201)||(27260473-27260540)
[»] chr1 (3 HSPs)
chr1 (134-201)||(13620254-13620321)
chr1 (134-201)||(52040388-52040455)
chr1 (304-342)||(38812543-38812581)
[»] chr7 (2 HSPs)
chr7 (134-201)||(21891982-21892049)
chr7 (137-197)||(3737027-3737086)
[»] chr5 (1 HSPs)
chr5 (134-201)||(1688059-1688126)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 53 - 345
Target Start/End: Original strand, 36120431 - 36120727
Alignment:
Q  53 ttaaagcatagcaaggcaaacatatacttaaat----acaaccatcatatggggtactaattaacttaatttaatctaagataattatttatctcactca 148  Q
    |||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36120431 ttaaagcatagcaaggcaaacatatacttaaatcgacacaaccatcgtatggggtactaattaacttaatttaatctaagataattatttatctcactca 36120530  T
Q  149 aacataatcataaactatccaaaaggtgggttctacaactaaaggaactcaccgcgacttatctgaccactttcaacagcttaagctccaccttctgctt 248  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36120531 aacataatcataaactatctaaaaggtgggttctacaactaaaggaactcaccgcgacttatctaaccactttcaacagcttaagctccaccttctgctt 36120630  T
Q  249 aagcctctgtctgccaagctcttgcttctgtcttctccagtctcctaaatccaattcctacttgttcttgtcagcccaatatgcataaacatcacag 345  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36120631 aagcctctgtctgccaagctcttgcttctgtcttctccagtcccctaaatccaattcctacttgtttttgtcagcccaatatgcataaacatcacag 36120727  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 41048388 - 41048321
Alignment:
Q  134 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 201  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  41048388 tatttatctcactcaaacataatcataaactacccaagaggtaggttctacaactaaaggaactcacc 41048321  T

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Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 53 - 345
Target Start/End: Original strand, 40566031 - 40566328
Alignment:
Q  53 ttaaagcatagcaaggcaaacatatacttaaat----acaaccatcatatggggtactaattaacttaatttaatctaagataattatttatctcactca 148  Q
    ||||| |||||||||||||||||||||||||||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40566031 ttaaatcatagcaaggcaaacatatacttaaatcgacacaaccatcgtatggggtactaattaacttaatttaatctaagataattatttatctcactca 40566130  T
Q  149 aacataatcataaactatccaaaaggtgggttctacaactaaaggaactcaccgcgacttatctgaccactttcaacagcttaagctccaccttctgctt 248  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||    
T  40566131 aacataatcataaactatctaaaaggtgggttctacaactaaaggaactcaccgcgacttatctaaccactttcaacagcttaagctccaccttcaactt 40566230  T
Q  249 aagcctctgtctgccaagctcttgcttctgtcttctccagtctcctaaatccaa-ttcctacttgttcttgtcagcccaatatgcataaacatcacag 345  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40566231 aagcctctgtctgccaagctcttgcttctgtcttctccagtcccctaaatccaatttcctacttgttcttgtcagcccaatatgcataaacatcacag 40566328  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 27260473 - 27260540
Alignment:
Q  134 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 201  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27260473 tatttatctcactcaaacataatcataaactatccaagaggtgggttctacaactaaaggaactcacc 27260540  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 13620321 - 13620254
Alignment:
Q  134 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 201  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13620321 tatttatctcactcaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 13620254  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 52040388 - 52040455
Alignment:
Q  134 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 201  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  52040388 tatttatctcactcaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 52040455  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 38812581 - 38812543
Alignment:
Q  304 tcctacttgttcttgtcagcccaatatgcataaacatca 342  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38812581 tcctacttgttcttgtcagcccaatatgcataaacatca 38812543  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 21891982 - 21892049
Alignment:
Q  134 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 201  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  21891982 tatttatctcactcaaacataatcataaactacccaagaggtaggttctacaactaaaggaactcacc 21892049  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 3737086 - 3737027
Alignment:
Q  137 ttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaact 197  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||    
T  3737086 ttatctcactcaaaaataatcataaactagc-aagaggtgggttctacaactaaaggaact 3737027  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 1688059 - 1688126
Alignment:
Q  134 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 201  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1688059 tatttatctcactaaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 1688126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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