View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12283_low_4 (Length: 282)
Name: NF12283_low_4
Description: NF12283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12283_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 32609834 - 32610080
Alignment:
| Q |
16 |
tgtgcgctaacccgagtttctaggaaaatgagctttaataatctgatgtttgaccgaaaggtaactaaagtttgataaaatattgttttacataggaatc |
115 |
Q |
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| T |
32609834 |
tgtgcactaacccgagtttctaggaaaataagctttaataatctgaagtttgatcgaaaggtaattaaagtttgataaaatattgttttacataggaatc |
32609933 |
T |
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| Q |
116 |
aaacttaaattctcccgaatgatt-gtccttcatgaaatttattaaccacttaaaatcaatcacttgattacttt-nnnnnnnntttacacttagattta |
213 |
Q |
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| T |
32609934 |
aaactccgattctcccgaatgattcgtccttcatgaaacttattaaccacttaaaatcaatcacttgattactttaaaaaacattttacacttagattta |
32610033 |
T |
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| Q |
214 |
tgatacaaaattcatctttatgaatttcttaaataagaagtttgtta |
260 |
Q |
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| T |
32610034 |
tgatacaaaattcatctttatgaatttcttaaataagaaatttgtta |
32610080 |
T |
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