View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12284_low_1 (Length: 430)
Name: NF12284_low_1
Description: NF12284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12284_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 42 - 413
Target Start/End: Original strand, 34549582 - 34549957
Alignment:
| Q |
42 |
cagagaccctaactaataacttcgttacatcagttgagaaatttaaccacattaactaacccttgtgatagctatagtgatgattaacgcacttgtttca |
141 |
Q |
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| T |
34549582 |
cagagaccctaactaataacttcgttacatcagttgagaaatttaaccacattaactaacccttgtgatagctataatgatgattaacgca-ttgtttca |
34549680 |
T |
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| Q |
142 |
tatacattgatggatatccccacccaacttaattgatggttccttcgcagaaaagaccttgagtttggtaggtatggaatcaaagcaggggtagagtggt |
241 |
Q |
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| T |
34549681 |
tatacattgatggatatccccacccaacttaattgatggttccttcgcagaaaacaccttgagtttggtaggtatggaatcaaagcaggggtagagtggt |
34549780 |
T |
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| Q |
242 |
tttgtgaatgagtctgaaatttgtaagacctaggaacatgcaaaataatgagttgtttggcaattactctttcttaaacaaaatggatgtcaaattcaat |
341 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549781 |
ttagtgaatgagtctgaaatttgtaagacctaggaacatgcaacataacaagttgtttggcaattactctttcttaaacaaaatggatgtcaaattcaat |
34549880 |
T |
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| Q |
342 |
gtgctttgggtgaggggc-----acagcactttaattatcacaagggttagggtatgcatcaaggctcaaagagtgt |
413 |
Q |
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| T |
34549881 |
gtgctttgggtgagggccgggccacaacactttaattatcacaagggttagggtaggcatcaaggctcaaagagtgt |
34549957 |
T |
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