View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12284_low_3 (Length: 336)
Name: NF12284_low_3
Description: NF12284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12284_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 51733043 - 51733347
Alignment:
| Q |
14 |
gcacagatgcgggtgagctatcaacttgaatatggggaccaccctgtgactcttaaactatgaagcaccgacacagacaccgaatacgatactgacaggt |
113 |
Q |
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| T |
51733043 |
gcacagatgcgggtgagctatcaacatgaatatggggaccaccctgtgactcttaaactatgaagcaccgacacagacaccgaatacgatactgacaggt |
51733142 |
T |
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| Q |
114 |
tgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctacaaagctcctagatacggcctattgatg |
213 |
Q |
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| T |
51733143 |
tgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctacaaagctcctagatatggcctattgatg |
51733242 |
T |
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| Q |
214 |
aatcaattcttttttgcagattaacggccgttcaattcaagacatgcagatatttggagatcctttgcgtataccagttgtgcttgttgaaagggtgatg |
313 |
Q |
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| T |
51733243 |
aatcaattcttttttgcagattaacggccgttcaattcaagacatgcagatatttggagatcctttgcgtataccagttgtgcttgttgaaagggtgatg |
51733342 |
T |
|
| Q |
314 |
aatgt |
318 |
Q |
| |
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||||| |
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| T |
51733343 |
aatgt |
51733347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 18268063 - 18268002
Alignment:
| Q |
116 |
acaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgt |
177 |
Q |
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| T |
18268063 |
acactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttgtgt |
18268002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 356081 - 356174
Alignment:
| Q |
224 |
tttttgcagattaacggccgttcaattcaagacatgcagatatttggagatcctttgcgtataccagttgtgcttgttgaaagggtgatgaatg |
317 |
Q |
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| T |
356081 |
tttttgcagattaacaaccaatcaattcaagacatgcaaatgtttggagatcctttacgtataccaattgtgattgttgaacgtgtgacgaatg |
356174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 17831622 - 17831566
Alignment:
| Q |
83 |
gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaat |
139 |
Q |
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| T |
17831622 |
gacacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaat |
17831566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 4323960 - 4323900
Alignment:
| Q |
83 |
gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaatagaa |
143 |
Q |
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||||| ||||||||| |||||||||||| ||||||| ||||||||| || ||||||||||| |
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| T |
4323960 |
gacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaatagaa |
4323900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 7936883 - 7936964
Alignment:
| Q |
104 |
actgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca |
187 |
Q |
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||||||| |||||||||| ||||| ||||||||||||||||||||| || | || |||||||||||| |||| |||||||| |
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| T |
7936883 |
actgacatgttgacaccggcaataa--tgagaaaatagaataattgaatgtcagcacatgtgtcggtgtcatgtcagtgctaca |
7936964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 9483382 - 9483437
Alignment:
| Q |
113 |
ttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcg |
168 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||| || |||| |||||||| |
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| T |
9483382 |
ttgacaccaataataatttgagaaaatagaataattgaatgtaaccatatgtgtcg |
9483437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 31924417 - 31924462
Alignment:
| Q |
106 |
tgacaggttgacaccgataataacttgagaaaatagaataattgaa |
151 |
Q |
| |
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||||| ||||||||||||||||| || ||||||||||| ||||||| |
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| T |
31924417 |
tgacacgttgacaccgataataatttaagaaaatagaacaattgaa |
31924462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 28452602 - 28452649
Alignment:
| Q |
133 |
agaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcgg |
180 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||| ||||||||||||| |
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| T |
28452602 |
agaaaataaaataattgaatgttaccacatgtgttggtgttgtgtcgg |
28452649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 41542562 - 41542507
Alignment:
| Q |
83 |
gacacagacaccgaatacgatactgacaggttgacaccgataataacttgagaaaa |
138 |
Q |
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||||| ||||||| || |||||||||| ||||||||||||||||| ||||||||| |
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| T |
41542562 |
gacacggacaccggttatgatactgacacgttgacaccgataataatttgagaaaa |
41542507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 19625975 - 19625927
Alignment:
| Q |
130 |
ttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtc |
178 |
Q |
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|||||||||| ||||||||||| || |||| ||||||| |||||||||| |
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| T |
19625975 |
ttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgtc |
19625927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 22402367 - 22402446
Alignment:
| Q |
99 |
acgatactgacaggttgacaccgataataacttgagaaaatagaa-taattgaacgttaccagatgtgtcggtgttgtgt |
177 |
Q |
| |
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|||||||||||| || || |||| |||||| |||||||||||||| | |||||| || |||| |||||||||||| |||| |
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| T |
22402367 |
acgatactgacatgtagagaccggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcgtgt |
22402446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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