View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12285_low_2 (Length: 600)
Name: NF12285_low_2
Description: NF12285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12285_low_2 |
 | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
| [»] scaffold0718 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 2878465 - 2878162
Alignment:
| Q |
19 |
agtttcaaaccaataccaagaaacaatgactctatctaactccaaagaaattaaacagatataatatagtgggttcaaaatttgtgacatggttcgtcac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
2878465 |
agtttcaaaccaataccaagaaacaatgactctatctaactccaaagaaattaaacagatataatatagtgggttcaaaacttgtgacatggttcgtcgc |
2878366 |
T |
|
| Q |
119 |
caaaacaataaataaaattttgcatgaaggctcaaaagggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2878365 |
caaaacaataaataaaattttgcatgaaggctcaaaagggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaaa |
2878266 |
T |
|
| Q |
219 |
tgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatgaaagaatt |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2878265 |
tgcctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatgaaagaatt |
2878166 |
T |
|
| Q |
319 |
atag |
322 |
Q |
| |
|
|||| |
|
|
| T |
2878165 |
atag |
2878162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 385 - 585
Target Start/End: Complemental strand, 2879933 - 2879733
Alignment:
| Q |
385 |
gttgtcatctagatactctcatccctaacaacatgaaaattagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccggacaaatttt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2879933 |
gttgtcatctagatactctcatccctaacaacatgaaaattagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccggacaaatttt |
2879834 |
T |
|
| Q |
485 |
ccgacaagaccaacgtcaccctgcatcgccgttctctatccggatccctttaattgtcgttgccttcctttcccattgtcatgcgctgcttcctctctct |
584 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2879833 |
ccgacaagaccaacgtcaccctgcatcgtcgttctctatccggatccctttaattgtcgttgccttcctttcccattgtcatgcgctgcttcttctctct |
2879734 |
T |
|
| Q |
585 |
g |
585 |
Q |
| |
|
| |
|
|
| T |
2879733 |
g |
2879733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 35023682 - 35023633
Alignment:
| Q |
389 |
tcatctagatactctcatccctaacaacatgaaaattagctactcatgat |
438 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35023682 |
tcatctagataatctcatccctaacaacaaaaaaattagctactcatgat |
35023633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 15553304 - 15553332
Alignment:
| Q |
176 |
taataataagggtggcttgaaaaggctca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15553304 |
taataataagggtggcttgaaaaggctca |
15553332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 23690072 - 23690375
Alignment:
| Q |
19 |
agtttcaaaccaataccaagaaacaatgactctatctaactccaaagaaattaaacagatataatatagtgggttcaaaatttgtgacatggttcgtcac |
118 |
Q |
| |
|
|||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23690072 |
agtttcaaaccaataccaagtacctatggctctatctaactccaaagaaattaaacagatataatatagtgggttcaaaacttgtgacatggttcgtcac |
23690171 |
T |
|
| Q |
119 |
caaaacaataaataaaattttgcatgaaggctcaaaagggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23690172 |
caaaacaacaaataaaattttgcatgaaggctcaaaagggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
23690271 |
T |
|
| Q |
219 |
tgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatgaaagaatt |
318 |
Q |
| |
|
|| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23690272 |
tgcctggtgtgtatgaaaatatgaccaatagtctgtagagaaccaatgcaagctctagaaaaataacattcaaacatggatactcacatatgaaagaatt |
23690371 |
T |
|
| Q |
319 |
atag |
322 |
Q |
| |
|
|||| |
|
|
| T |
23690372 |
atag |
23690375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 3584681 - 3584785
Alignment:
| Q |
169 |
ataatcataataataagggtggcttgaaaaggctcagagtaccaaacaa-gtgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgc |
267 |
Q |
| |
|
||||| |||||||||| ||||||||| ||| ||| ||||||||||| || ||||||||||||||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
3584681 |
ataataataataataatggtggcttggaaatgcttagagtaccaaaaaatgtgtctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgc |
3584780 |
T |
|
| Q |
268 |
aagct |
272 |
Q |
| |
|
||||| |
|
|
| T |
3584781 |
aagct |
3584785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 23409632 - 23409579
Alignment:
| Q |
385 |
gttgtcatctagatactctcatccctaacaacatgaaaattagctactcatgat |
438 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23409632 |
gttgtcatctagataatctcatccctaacaacacgaaaattagctactcatgat |
23409579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 25705486 - 25705432
Alignment:
| Q |
207 |
gtaccaaacaagtgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaac |
261 |
Q |
| |
|
|||||||| || |||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
25705486 |
gtaccaaagaaatgtctcgtgtgtatgatgatacaaccaatagtctgtatagaac |
25705432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 40338 - 40638
Alignment:
| Q |
19 |
agtttcaaaccaataccaagaaacaatgactctatctaactccaaagaaattaaacagatataatatagtgggttcaaaatttgtgacatggttcgtcac |
118 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
40338 |
agtttcaaaccaataccaagtacctatgactctatctaactccaaagaaattaaacagatataataaagtgggttcaaaacttgtgacatggttcgtcac |
40437 |
T |
|
| Q |
119 |
caaaacaataaataaaattttgcatgaaggctcaaaagggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
218 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40438 |
caaaacaacaaagaaaattttgaatgaaggctcaaaggggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
40537 |
T |
|
| Q |
219 |
tgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatgaaagaatt |
318 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40538 |
tgcctcgtgtgtatgaaaatacggccaatagtctgtagagaaccaattcaagttccagaaaaataacattcaaacatggatactcacatatgaaagaatt |
40637 |
T |
|
| Q |
319 |
a |
319 |
Q |
| |
|
| |
|
|
| T |
40638 |
a |
40638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 12676749 - 12677049
Alignment:
| Q |
19 |
agtttcaaaccaataccaagaaacaatgactctatctaactccaaagaaattaaacagatataatatagtgggttcaaaatttgtgacatggttcgtcac |
118 |
Q |
| |
|
||||| |||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
12676749 |
agttttaaaccaatacgaagtacctatggctctatctaactcgaaagaaattaaacagatataataaagtgggttcaaaacttgtgacatggttcgtcac |
12676848 |
T |
|
| Q |
119 |
caaaacaataaataaaattttgcatgaaggctcaaaagggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
218 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12676849 |
caaaacaacaaagaaaattttgcatgaaggctcaaaggggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
12676948 |
T |
|
| Q |
219 |
tgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatgaaagaatt |
318 |
Q |
| |
|
|| |||||||||| ||||||| |||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
12676949 |
tgcctcgtgtgtaagaaaataagaccaacagtctgtagagaaccaatacaagctccagaaaaataacattcaaacatggatactcacatatgcaagaatt |
12677048 |
T |
|
| Q |
319 |
a |
319 |
Q |
| |
|
| |
|
|
| T |
12677049 |
a |
12677049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 49 - 311
Target Start/End: Complemental strand, 20132736 - 20132476
Alignment:
| Q |
49 |
tctatctaactccaaagaaattaaacagatataatatagtgggttcaaa-atttgtgacatggttcgtcaccaaaacaataaataaaattttgcatgaag |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || ||| ||| ||| |||||||||| |||| ||||||| |||||| | ||| |||| || |
|
|
| T |
20132736 |
tctatctaactccaaagaaattaaacagatataacattttgagttgaaatttttctgacatggtttgtcaataaaacaacaaataataattt-catg-ag |
20132639 |
T |
|
| Q |
148 |
gctcaaa-agggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaagtgtctcgtgtgtatgaaaatacgaccaa |
246 |
Q |
| |
|
||||||| ||||||| ||| ||||| ||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||| | || || ||| |
|
|
| T |
20132638 |
gctcaaagtgggttagtcaagaataataata--aataagagtggcttgaaaagggtcggagtaccaaacaagtgtctcgtgtgtatgacattatgatcaa |
20132541 |
T |
|
| Q |
247 |
tagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatga |
311 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
20132540 |
tagtctgtagagaaccaatgcaagctccaagaaaataatattcaaacatagatactcacatatga |
20132476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 296
Target Start/End: Complemental strand, 21322817 - 21322573
Alignment:
| Q |
50 |
ctatctaactccaaagaaattaaacagatataatatagtgggttcaaaatttgtgacatggttcgtcaccaaaacaataaataaaattttgcatgaaggc |
149 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||| || || ||||||||||| ||||||||||| |||||||||||| ||| ||||||| |||| |||| |
|
|
| T |
21322817 |
ctatctaaatccaacgaaattaaacaaatataacat--tgagttcaaaatttatgacatggttcatcaccaaaacaacaaagaaaattt--catggaggc |
21322722 |
T |
|
| Q |
150 |
tcaaa-agggttagc--aaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaa-gtgtctcgtgtgtatgaaaatacgacca |
245 |
Q |
| |
|
||||| || ||||| | |||| ||| |||||||||| |||||||| ||||| || || || || || || || || |||||| |||||| ||||| |
|
|
| T |
21322721 |
tcaaagtggattagcatataggaaaat-ataataataaaggtggctttaaaagacttagcgttccgaataacatgcttcatgtgtaagaaaat-ggacca |
21322624 |
T |
|
| Q |
246 |
atagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatg |
296 |
Q |
| |
|
||||| |||||||||||| ||| |||||| ||||||||||| ||||||| |
|
|
| T |
21322623 |
gtagtccttagagaaccaatacaaactctaggaaaataacattcaaacatg |
21322573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 11520111 - 11520068
Alignment:
| Q |
212 |
aaacaagtgtctcgtgtgtatgaaaatacgaccaatagtctgta |
255 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
11520111 |
aaacaaatgtctcgtgtgtatgacaatacaaccaatagtctgta |
11520068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0718 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0718
Description:
Target: scaffold0718; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 1463 - 1163
Alignment:
| Q |
19 |
agtttcaaaccaataccaagaaacaatgactctatctaactccaaagaaattaaacagatataatatagtgggttcaaaatttgtgacatggttcgtcac |
118 |
Q |
| |
|
||||| |||||||||||||| | | ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1463 |
agttttaaaccaataccaagtacctatggctctatctaactccaaaggaattaaacagatataataaagtgggttcaaaacttgtgacatggtttgtcac |
1364 |
T |
|
| Q |
119 |
caaaacaataaataaaattttgcatgaaggctcaaaagggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
218 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1363 |
caaaacaacaaagaaaattttgcatgaaggctcaaaggggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaag |
1264 |
T |
|
| Q |
219 |
tgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatgaaagaatt |
318 |
Q |
| |
|
|| |||||||||| ||||||| | |||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1263 |
tgcctcgtgtgtacgaaaatatggccaacagtctgtagagaaccaatgcaagctccttaaaaataacattcaaacatggatactcacatatgaaagaatt |
1164 |
T |
|
| Q |
319 |
a |
319 |
Q |
| |
|
| |
|
|
| T |
1163 |
a |
1163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 49 - 322
Target Start/End: Original strand, 9346237 - 9346508
Alignment:
| Q |
49 |
tctatctaactccaaagaaattaaacagatataatatagtgggttcaaaatttgtgacatggttcgtcaccaaaacaataaataaaattttgcatgaagg |
148 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || |||||| |||| |||||||| ||| ||||| ||||||| ||| || | ||||||||||| |
|
|
| T |
9346237 |
tctatctaactccaaagaaattaaacagacataacattttgggtttaaaacttgtgacacagtttgtcacgaaaacaacaaagaa--tcttgcatgaagg |
9346334 |
T |
|
| Q |
149 |
ctcaaaagggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaagtgtctcgtgtgtatgaaaatacgaccaata |
248 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
9346335 |
ctcaatggggttagcaaaggataatcagaataatcagggtggcttgaaaaggctcagagtaccaaacaagtgcctcgtgtgtatgacaatacgaccaata |
9346434 |
T |
|
| Q |
249 |
gtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatgaaagaattatag |
322 |
Q |
| |
|
| ||||||||||||| ||||| ||| || ||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
9346435 |
gactgtagagaaccagtgcaaactcgaggaaaataacattgaaacatggatactcacatatgaaagaaatatag |
9346508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 447 - 585
Target Start/End: Complemental strand, 53436540 - 53436415
Alignment:
| Q |
447 |
taaacaacaaagaaaagagaataaaccggacaaattttccgacaagaccaacgtcaccctgcatcgccgttctctatccggatccctttaattgtcgttg |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53436540 |
taaacaacaaagaaaagagaataaaccggacaaattttc-------------gtcaccctgcatcgccgttctctatccggatccctttaattgtcgttg |
53436454 |
T |
|
| Q |
547 |
ccttcctttcccattgtcatgcgctgcttcctctctctg |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53436453 |
ccttcctttcccattgtcatgcgctgcttcttctctctg |
53436415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 53436974 - 53436905
Alignment:
| Q |
385 |
gttgtcatctagatactctcatccctaacaacatgaaaattagctactcatgataaagaaaataaacaac |
454 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53436974 |
gttgtcatctcgatactctcatccctaacaacatgaaaattagctactcatgataaagaaaataaacaac |
53436905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 46671405 - 46671458
Alignment:
| Q |
385 |
gttgtcatctagatactctcatccctaacaacatgaaaattagctactcatgat |
438 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46671405 |
gttgtcatttagataatctcatccctaacaacaagaaaattagctactcatgat |
46671458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 12023774 - 12023830
Alignment:
| Q |
185 |
gggtggcttgaaaa-ggctcagagtaccaaa-caagtgtctcgtgtgtatgaaaata |
239 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
12023774 |
gggtggcttgaaaaaggctcaaagtaccaaaacaagtgtctcatgtgtatgataata |
12023830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 49 - 320
Target Start/End: Original strand, 22571298 - 22571566
Alignment:
| Q |
49 |
tctatctaactccaaagaaattaaacagatataatatagtgggttcaaaatttgtgacatggttcgtcaccaaaacaataaataaaattttgcatgaagg |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||||| ||||| |||| | ||| ||||| ||||| | |
|
|
| T |
22571298 |
tctatctaactccaaataaattaaacagataaaatattgtgggttcaaaacttgtgacatggtttgtcacaaaaa--acaaagaaaatc--gcatggaaa |
22571393 |
T |
|
| Q |
149 |
ctcaaaa-gggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaa-gtgtctcgtgtgtatgaaaatacgaccaa |
246 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||| || ||| ||||||||||||||||||| |||||||| |||||| |||||||||||||||||| || |
|
|
| T |
22571394 |
ctcaaagtgggttagcaatggataa-cataatacgaatggttgcttgaaaaggctcagagtgccaaacaacgtgtcttatgtgtatgaaaatacgactaa |
22571492 |
T |
|
| Q |
247 |
tagtctgtagagaaccaatgcaagctctagaaaaataacatttaaacatggatactcacatatgaaagaattat |
320 |
Q |
| |
|
|| | |||||| ||||||||||||| | || ||||||||| |||||| || ||||| || ||||||||||| |
|
|
| T |
22571493 |
taatttgtagaaaaccaatgcaagccatggatgaataacattcaaacatagacactcaaatgcgaaagaattat |
22571566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 14796806 - 14796730
Alignment:
| Q |
180 |
aataagggtggcttgaaaaggctcagagtaccaaacaagtgtctcgtgtgtatgaaaatacgaccaatagtctgtag |
256 |
Q |
| |
|
||||||| || |||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
14796806 |
aataaggatgacttgaaaacgctcaaagtatcaaacaagtgtctcgtgtgtatgataatacgaccaatagtgtgtag |
14796730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 14805680 - 14805604
Alignment:
| Q |
180 |
aataagggtggcttgaaaaggctcagagtaccaaacaagtgtctcgtgtgtatgaaaatacgaccaatagtctgtag |
256 |
Q |
| |
|
||||||| || |||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
14805680 |
aataaggatgacttgaaaacgctcaaagtatcaaacaagtgtctcgtgtgtatgataatacgaccaatagtgtgtag |
14805604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 10020693 - 10020598
Alignment:
| Q |
156 |
gggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaa-gtgtctcgtgtgtatgaaaatacgaccaatagtct |
252 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| | || ||||||||| || ||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
10020693 |
gggttagcaaaggataa-cataacaataagggtggcttgaaa-gacttagagtaccagcaaatgtgcctcgtgtgtaagaaagtacgaccaatagtct |
10020598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 304
Target Start/End: Complemental strand, 23499546 - 23499400
Alignment:
| Q |
157 |
ggttagcaaaggataatcataataataagggtggcttgaaaaggctcagagtaccaaacaagtgtctcgtgtgtatgaaaatacgaccaatagtctgtag |
256 |
Q |
| |
|
||||| |||||||||| |||||||||||| || ||| |||||||||||||||||||| | | | || || || | ||| || ||||||||||||| || |
|
|
| T |
23499546 |
ggttaacaaaggataa-cataataataagagtaacttcaaaaggctcagagtaccaaaaacgggccttgtatgattaaaattatgaccaatagtctggag |
23499448 |
T |
|
| Q |
257 |
agaaccaatgcaagctctagaaaaataacatttaaacatggatactca |
304 |
Q |
| |
|
|||| ||||||| | | || || |||||||| ||||||||| ||||| |
|
|
| T |
23499447 |
agaagcaatgcatgtttcaggaacataacattcaaacatggacactca |
23499400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 10034360 - 10034267
Alignment:
| Q |
156 |
gggttagcaaaggataatcataataataagggtggcttgaaaa-ggctcagagtaccaaacaa-gtgtctcgtgtgtatgaaaatacgaccaata |
248 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||| ||||||| |||| ||||||||| | || ||| |||||||||| |||| ||||||||||| |
|
|
| T |
10034360 |
gggttagcaaaggttaa-cataacaataagggtggtttgaaaaaggcttagagtaccagaaaatgtgcctcgtgtgtaagaaagtacgaccaata |
10034267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 11806143 - 11806260
Alignment:
| Q |
180 |
aataagggtggcttgaaaaggctcagagtaccaaacaa--gtgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagctctaga |
277 |
Q |
| |
|
||||||| ||||||||||| ||| ||||| ||||||| ||||||| ||||| ||||||||| ||||| ||| | ||||||| ||||||| ||| | |
|
|
| T |
11806143 |
aataaggaaggcttgaaaagactccgagtatcaaacaaatgtgtctcatgtgtttgaaaatacaaccaacagtgtttagagaagaaatgcaatctcgaag |
11806242 |
T |
|
| Q |
278 |
aaaataacatttaaacat |
295 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
11806243 |
aaaataacattttaacat |
11806260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 30251799 - 30251713
Alignment:
| Q |
183 |
aagggtggcttgaaaaggctcagagtaccaaacaa-gtgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgca |
268 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||| |||||| || |||||| ||||||| |
|
|
| T |
30251799 |
aagggtggcttgaaaattctcagagtaccaaacaatatgtctcgtgtttatataaatacgatcaatagactaaagagaaacaatgca |
30251713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 385 - 490
Target Start/End: Complemental strand, 28633792 - 28633687
Alignment:
| Q |
385 |
gttgtcatctagatactctcatccctaacaacatgaaaat-tagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccggacaaattt |
483 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28633792 |
gttgtcatctagataatttcatccctaacaat-tgagaatctagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccagacaaattt |
28633694 |
T |
|
| Q |
484 |
tccgaca |
490 |
Q |
| |
|
|| |||| |
|
|
| T |
28633693 |
tctgaca |
28633687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 41363001 - 41362948
Alignment:
| Q |
385 |
gttgtcatctagatactctcatccctaacaacatgaaaattagctactcatgat |
438 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
41363001 |
gttgtcatctagataatctcatccataacaacataaaaattagctactcatgat |
41362948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 27867487 - 27867536
Alignment:
| Q |
212 |
aaacaagtgtctcgtgtgtatgaaaatacgaccaatagtctgtagagaac |
261 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| |||||| ||||||||| |
|
|
| T |
27867487 |
aaacaagtgtctcgtgtgtatgataataaaaccgatagtccgtagagaac |
27867536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 385 - 490
Target Start/End: Original strand, 40287 - 40392
Alignment:
| Q |
385 |
gttgtcatctagatactctcatccctaacaacatgaaaattagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccggacaaatttt |
484 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | || |||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40287 |
gttgtcatctagataatctcatcccaaacaattgggaatctagctactcatggtaaagaaaacaaacaacaaagaaaagagaataaaccagacaaatttt |
40386 |
T |
|
| Q |
485 |
ccgaca |
490 |
Q |
| |
|
| |||| |
|
|
| T |
40387 |
ctgaca |
40392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 39439426 - 39439489
Alignment:
| Q |
195 |
aaaaggctcagagtaccaaacaagtgtctcgtgtgtatgaaaatacgaccaatagtctgtagag |
258 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| ||| ||||||| ||||||| ||||||| |
|
|
| T |
39439426 |
aaaaggctcggagtaccaaacaattgtctcgtgtgtttgataatacgatcaatagtttgtagag |
39439489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 474
Target Start/End: Complemental strand, 32837725 - 32837669
Alignment:
| Q |
418 |
tgaaaattagctactcatgataaagaaaataaacaacaaagaaaagagaataaaccg |
474 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| || ||||| ||||||||| |
|
|
| T |
32837725 |
tgaaaattagctagacatgataaaagaaataaacaacatagtaaagaaaataaaccg |
32837669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University