View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12285_low_3 (Length: 531)
Name: NF12285_low_3
Description: NF12285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12285_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 22 - 518
Target Start/End: Original strand, 63409 - 63906
Alignment:
| Q |
22 |
tggtatggaccaactacgagcgtgacaagccaagacccaataaaaactggcccacaatggcgatggaccaagctaagcttcttgtgcggcaccgcatgag |
121 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||| |
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| T |
63409 |
tggtatggaccaattacgagcgcgacaagccaagacccaataaagactggcccacaatggcgatggaccaggctaagcttcgtgtgcagcaccgcacgag |
63508 |
T |
|
| Q |
122 |
agcaccctcgggtccacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| |
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| T |
63509 |
agcaccctcgggtccacttttacctcatttcgcacatattcaccttattctcttacgggcttgagcgtcagagtactaacgtatatgcagacacaattct |
63608 |
T |
|
| Q |
222 |
cctctgtcgtgaagaccaccgcaaaggatcaaactccactgcgacagatcaccaaacacaagtgcatcttttctcaattttcattggacagatcagacac |
321 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
63609 |
cctccgtcgtgaagaccaccgcaaaggatcaacctccactgcgacagatcaccaaacacaagcgcatcttttctcaatcttcattggacagatcagacat |
63708 |
T |
|
| Q |
322 |
atttcatgaaaatttgatcaaatgtttcttatcatacttttaatgctactcacctccctatatcatacaaacaatctccttgtc-nnnnnnnnnncatac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
63709 |
atttcatgaaaatttgatcaaatgtttcttatcatacttttaatgctactgacctccctatatcatacaaacaatctccttgtcaaaaaaaaaaacatac |
63808 |
T |
|
| Q |
421 |
aaacaatctcaattgactcaccaactcatatcttaaataggagtacccatgtctggcctgtggattaagattcatgcctgtatatggcccatatgggt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
63809 |
aaacaatctcaattgactcaccaactcatatcttaaataggagtacccatgtctggcctttggattaagattcatgcctgtatatggcccatatgggt |
63906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 31696830 - 31696928
Alignment:
| Q |
136 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaa |
234 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||| |||||| ||| |||| || || |||| ||||| | ||| || |||||||||||||||||||||| |
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| T |
31696830 |
cacttttaccacatttcacacatatccacctcattctcataccaacttgagtttcggagtgctaacatgcatgtagacacaattctcctctgtcgtgaa |
31696928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 31080830 - 31080770
Alignment:
| Q |
198 |
taacgtatatgcaggcacaattctcctctgtcgtgaagaccaccgcaaaggatcaaactcc |
258 |
Q |
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||||||| |||| ||||||| |||| |||||||||||||||||| ||||||||| |||| |
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|
| T |
31080830 |
taacgtacttgcaagcacaatcatcctatgtcgtgaagaccaccgcgaaggatcaacctcc |
31080770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 34954930 - 34954814
Alignment:
| Q |
137 |
acttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaaga |
236 |
Q |
| |
|
||||||||| |||||| ||||||| ||||| |||||| || || || ||| | || | |||||||| ||||| | |||||||||||| |||| |||| |
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|
| T |
34954930 |
acttttaccacatttcacacatatccacctcattctcatagtgaattgagcgttggattgctaacgtacatgcaagtacaattctcctccatcgtaaaga |
34954831 |
T |
|
| Q |
237 |
ccaccgcaaaggatcaa |
253 |
Q |
| |
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||||||||||||||||| |
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| T |
34954830 |
ccaccgcaaaggatcaa |
34954814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 26887989 - 26888105
Alignment:
| Q |
136 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaag |
235 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| |||||| ||| |||||||||||||||| |||||| || |||||||| ||||||| ||||||| |
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| T |
26887989 |
cacttttaccccattttgcacatatccacctcattctcatactaacttaagcatcagagttctaacgcgcttgaaggcacaagtctcctccaccgtgaag |
26888088 |
T |
|
| Q |
236 |
accaccgcaaaggatca |
252 |
Q |
| |
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| ||||| |||||||| |
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|
| T |
26888089 |
agcaccgtgaaggatca |
26888105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 48954343 - 48954440
Alignment:
| Q |
137 |
acttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaa |
234 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||| || ||| |||| ||| | ||||| |||||| | ||||||||||||||||||| | |||||| |
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| T |
48954343 |
acttttaccccatttcgcacatatccacctcattttcatactaacttgagcgtgagagtgctaacgagtttgcaggcacaattctcctccgccgtgaa |
48954440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 4156738 - 4156624
Alignment:
| Q |
136 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaag |
235 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||| || || |||||||| ||||||| |||| | | ||||| ||||||||||||||| ||||||| |
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| T |
4156738 |
cacttttaccatatttcacacatattcacctcattttcatattgacttaagtgtcagagtgttaacatgtttgcagacacaattctcctctgccgtgaag |
4156639 |
T |
|
| Q |
236 |
accaccgcaaaggat |
250 |
Q |
| |
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| |||| | |||||| |
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|
| T |
4156638 |
atcaccacgaaggat |
4156624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 12200436 - 12200383
Alignment:
| Q |
189 |
tcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaagaccaccg |
242 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||| || ||||||||| |
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| T |
12200436 |
tcagagtgctaacgtgcttgcaggcacaattctcctctgtcttggagaccaccg |
12200383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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