View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12285_low_5 (Length: 352)
Name: NF12285_low_5
Description: NF12285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12285_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 7141578 - 7141910
Alignment:
| Q |
1 |
agaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatgatgct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7141578 |
agaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgct |
7141677 |
T |
|
| Q |
101 |
gagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141678 |
gagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgg |
7141777 |
T |
|
| Q |
201 |
gtatgacctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttgga |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141778 |
gtatgacctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttgga |
7141877 |
T |
|
| Q |
301 |
tatgatagaagattttggactaacagttggaag |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
7141878 |
tatgatagaagattttggactaacagttggaag |
7141910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 7154361 - 7154652
Alignment:
| Q |
14 |
atagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattc |
113 |
Q |
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|
|||||||| ||||| |||||||||||||||| ||| | ||||||||||||||| | | ||||||||| ||||||||| ||||||||||| ||| |||| |
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| T |
7154361 |
atagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattc |
7154460 |
T |
|
| Q |
114 |
cagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttgg |
213 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||| || |||||||| ||||||||||| || ||| | ||||| |
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|
| T |
7154461 |
cagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaatgtgtccaggcatgtcatttgg |
7154560 |
T |
|
| Q |
214 |
tttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttggatatga |
305 |
Q |
| |
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| |||| |||||||| ||||| | ||| |||| || ||||| ||||| |||||||| |||||||||||||| || ||||||||||||||| |
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| T |
7154561 |
tatagctagtgttatgcttcctcttgctttattactatatcattttaattgggaactaccaaatcagatgaaacctgaggatttggatatga |
7154652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 7131859 - 7132158
Alignment:
| Q |
6 |
taaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagag |
105 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||| |||| |||| | || |||| |||||| || | ||| |||||| ||||||||| ||||||||||| |
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| T |
7131859 |
taaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagat |
7131958 |
T |
|
| Q |
106 |
gtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatg |
205 |
Q |
| |
|
||||| ||||||||| ||||| | ||||| |||||||| | ||| ||||| || || || ||||||| ||||| || || ||||| || || || || |
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| T |
7131959 |
gtttaatccagagagatttgaaggtagttctattgattttagagggaataattttgaatatcttccttttggagcaggtagaagaatttgccctggcttg |
7132058 |
T |
|
| Q |
206 |
acctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttggatatga |
305 |
Q |
| |
|
|||||| |||| || |||| ||||| ||||| |||| || ||||| ||||| |||||||| || ||| ||||||| || |||||||||||||| |
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|
| T |
7132059 |
caatttggtatagctggtattatgcttcctgtggctttattactttatcattttaattgggaacttcctaataagatgaaacctatggatttggatatga |
7132158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 41305312 - 41305457
Alignment:
| Q |
56 |
aatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata |
155 |
Q |
| |
|
||||| ||||| || ||||||||||| || |||||| ||| |||||||| |||| || |||||||||| | |||| | |||||||||||||| | |
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|
| T |
41305312 |
aatgcttgggcgattggaagagatccaaagtattgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacag |
41305411 |
T |
|
| Q |
156 |
acttcgagtacattcctttcggagctggaaggagaatgtgtccggg |
201 |
Q |
| |
|
|||| || ||||| || || || ||||||||||| ||||||||||| |
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|
| T |
41305412 |
actttgaatacataccatttggtgctggaaggaggatgtgtccggg |
41305457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 31177755 - 31177694
Alignment:
| Q |
137 |
attgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtcc |
198 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| || ||||| |||||||| ||||||||||| |
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|
| T |
31177755 |
attgatttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgtgtcc |
31177694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 41337787 - 41337875
Alignment:
| Q |
62 |
tgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaagg |
150 |
Q |
| |
|
|||||||| ||||||||||| || |||||| ||| |||||||| |||| || |||||||||| | |||| | |||||||||||||| |
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|
| T |
41337787 |
tgggcaattggaagagatccaaagtattgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaagg |
41337875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 22986407 - 22986265
Alignment:
| Q |
56 |
aatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata |
155 |
Q |
| |
|
||||| ||||| || ||| | |||||||||||||||||||| | || | |||| ||| ||||||||| |||||||| |||||||||||||||| || |
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|
| T |
22986407 |
aatgcttgggccattggacgggatcctaaatattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaacta |
22986308 |
T |
|
| Q |
156 |
acttcgagtacattcctttcggagctggaaggagaatgtgtcc |
198 |
Q |
| |
|
| || ||||||||||| || || |||||||||||||| ||||| |
|
|
| T |
22986307 |
attttgagtacattccatttggtgctggaaggagaatttgtcc |
22986265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 23610350 - 23610187
Alignment:
| Q |
53 |
ataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaa |
152 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| | || | |||| ||| || |||||| |||||| | ||||||||| ||||| |
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|
| T |
23610350 |
ataaatgcttgggcaataggaagggatcctaaatattggaatgacccagataagttttatcctgaaaggtttattgatagctctattgatttctcaggaa |
23610251 |
T |
|
| Q |
153 |
ataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttggttt |
216 |
Q |
| |
|
||| || |||| |||||| || || ||||| |||||||| ||||| || |||| || |||||| |
|
|
| T |
23610250 |
ctaattttgagttcattccatttggtgctggtaggagaatttgtcccggcatgaactatggttt |
23610187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 12425353 - 12425274
Alignment:
| Q |
54 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
133 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||| || ||||||||| |||||||| |
|
|
| T |
12425353 |
taaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagt |
12425274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 12268332 - 12268409
Alignment:
| Q |
54 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgata |
131 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||| |||||| |||| |||||| || ||||||||| |||||| |
|
|
| T |
12268332 |
taaatgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttatacctgagaggtttcatgata |
12268409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 55955026 - 55954947
Alignment:
| Q |
54 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
133 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||| ||||||| ||| |||||| || || |||||| |||||||| |
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|
| T |
55955026 |
taaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttatacctgaaaggtttaatgatagt |
55954947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 41795792 - 41795747
Alignment:
| Q |
54 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgc |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
41795792 |
taaatgcatgggcaatcggaagagatcccaaatattgatatgatgc |
41795747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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