View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12285_low_6 (Length: 341)
Name: NF12285_low_6
Description: NF12285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12285_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 196 - 339
Target Start/End: Original strand, 37749329 - 37749472
Alignment:
| Q |
196 |
tttggcttattgtttctcaaaaaaccagtgctataactgtacctgtttgtttcacaactcctttccactattcacgttatttcacagaccctcatcctta |
295 |
Q |
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| T |
37749329 |
tttggtttattgtttctcaaaaaaccagtgctataactgtacctgtttgtttcacaactcctttccactattcacgttatttcacagaccctcatcctta |
37749428 |
T |
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| Q |
296 |
cgtttcttgaaatctgcaatttcttcacaaatctctgctccttc |
339 |
Q |
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| T |
37749429 |
cgtttcttgaaatctgcaatttcttcacaaatctcagcttcttc |
37749472 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 37749158 - 37749218
Alignment:
| Q |
20 |
gatgatcatacaaacgaagtttgagagaacaatttaggtacctatatacgtaggggtgtgc |
80 |
Q |
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| T |
37749158 |
gatgatctcacaaacgaagtttgagagaacaatttaggcacctatatacgtaggggtgtgc |
37749218 |
T |
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