View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12285_low_7 (Length: 328)
Name: NF12285_low_7
Description: NF12285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12285_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 12945592 - 12945888
Alignment:
| Q |
17 |
tggtggaaaatgagcgaggaagggtggtagaggatgaaaccaccaccatggaagtagagaataatggggagtttggcagcagaggaagacggtggagggt |
116 |
Q |
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| T |
12945592 |
tggtggaaaatgagcgaggaagggtggtagaggatgaaaccaccaccatggaagtagagaataatggggagtttggcagcagaggaagacggtggagggt |
12945691 |
T |
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| Q |
117 |
tcgggaggaagagacgaatggaggttttcgcagcggcgtttaagggaatgtccttagagagagccggttgcggtggcgaattagtgggatcggaggatga |
216 |
Q |
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| T |
12945692 |
tcgggaggaagagacgaatggaggttttcgcagcggcgtttaagggaatgtctttagagagagccggttgcagtggcgaattagtgggatcggaggatga |
12945791 |
T |
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| Q |
217 |
tggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagttgagtttgattttgaggaattcatagggatccatagtggagttttgtttg |
313 |
Q |
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| T |
12945792 |
tggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagttgagtttgattttgaggaattcatagggatccatagtggagttttgtttg |
12945888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 12938092 - 12938204
Alignment:
| Q |
201 |
tgggatcggaggatgatggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagttgagtttgattttgaggaattcatagggatccatagt |
300 |
Q |
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| T |
12938092 |
tgggatcggaggatggtggcacggtagggacgttgtcgtttcttgtgagggaaccatcagggttgagtttgatttcgaggaattcatagggatcgatggt |
12938191 |
T |
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| Q |
301 |
ggagttttgtttg |
313 |
Q |
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| T |
12938192 |
ggagtttggtttg |
12938204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 12937938 - 12938044
Alignment:
| Q |
35 |
gaagggtggtagaggatgaaaccaccaccatggaagtagagaataatggggagtttggcagcagaggaagacggtggagggttcgggaggaagagacgaa |
134 |
Q |
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||||| |||||| ||| ||||||||||||||||||||||||||| | ||||| || || || || |||| ||||||||||| |||||||||| || | |
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| T |
12937938 |
gaaggatggtagcggaagaaaccaccaccatggaagtagagaatgagagggagcttagccgcggaagaaggtggtggagggtttgggaggaagatgcgga |
12938037 |
T |
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| Q |
135 |
tggaggt |
141 |
Q |
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| T |
12938038 |
tggaggt |
12938044 |
T |
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