View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12286_high_1 (Length: 416)

Name: NF12286_high_1
Description: NF12286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12286_high_1
NF12286_high_1
[»] chr4 (7 HSPs)
chr4 (106-403)||(4908321-4908617)
chr4 (190-321)||(4902559-4902688)
chr4 (191-282)||(4916347-4916434)
chr4 (221-302)||(4896572-4896647)
chr4 (1-44)||(4908281-4908324)
chr4 (252-355)||(4938075-4938179)
chr4 (286-355)||(4984800-4984869)
[»] chr6 (3 HSPs)
chr6 (220-350)||(22009481-22009611)
chr6 (191-333)||(22055396-22055544)
chr6 (191-333)||(22020899-22021050)
[»] chr2 (3 HSPs)
chr2 (220-350)||(44309763-44309893)
chr2 (191-333)||(44365781-44365929)
chr2 (191-333)||(44331007-44331158)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 106 - 403
Target Start/End: Original strand, 4908321 - 4908617
Alignment:
Q  106 tccaacgaatattgtacacaactaaatccttaccactactacacgaaagattatccaaataaaattgtacacgaaaaatatttcaaaaaactatttgttc 205  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4908321 tccaacgaatattgtacacaactaaattcttaccactactacacgaaagattctccaaataaaattgtacacgaaaaatatttcaaaaaactatttgttc 4908420  T
Q  206 tcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4908421 tcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaataacaacttgttcactaaattccctttga 4908520  T
Q  306 gaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgtgnnnnnnnnngtcatcgtttgtattagttttaaaaatatattggctct 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||||||||||||    
T  4908521 gaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgt-tttttttttgtcatcctttgtattagttttaaaaatatattggctct 4908617  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 4902559 - 4902688
Alignment:
Q  190 aaaaaactatttgttctcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacct---caacaacaacttg 286  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||||||||     || ||||||||||||||||||||||   |||||||||||||    
T  4902559 aaaaaactatttgttctcaataatgacttctttatataatgttgaaacttacca-----ctactcttgtactcactttgaacctcaacaacaacaacttg 4902653  T
Q  287 ttcactaaattccctttgagaattgttcttccaaa 321  Q
    |||| ||||||||||| || ||||| |||||||||    
T  4902654 ttcaataaattcccttcgaaaattgctcttccaaa 4902688  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 4916347 - 4916434
Alignment:
Q  191 aaaaactatttgttctcaataatgattgctttatataat-gctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa 282  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||     || || |||||| ||||||||||||||||||||||||    
T  4916347 aaaaactatttgttctcaataatgattgctttatataatggctgaaactta-----tcactactcttgcactcactttgaacctcaacaacaa 4916434  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 4896572 - 4896647
Alignment:
Q  221 ttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctt 302  Q
    |||||||||||||||||||||||     || |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  4896572 ttatataatgctgaaacttacca-----ctactcttgtactcactttgaaccttaacaacaa-ttgttcactaaattccctt 4896647  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4908281 - 4908324
Alignment:
Q  1 caattcaatcgtaacgaacacaggatatgcaagaagtgtatcca 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  4908281 caattcaatcgtaacgaacacagggtatgcaagaagtgtatcca 4908324  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 4938075 - 4938179
Alignment:
Q  252 ctcttgtactcactttgaacctcaacaacaacttgttcac--taaattccctttgagaattgttcttccaaacaatgagtgcttctcatagtgaataatt 349  Q
    ||||||| |||||||||||||||||||||||  | ||| |  |||||| |||| ||||||||||||| | |||||||||||||||||| |   |||||||    
T  4938075 ctcttgtcctcactttgaacctcaacaacaaactcttcgctataaatttccttcgagaattgttctt-ctaacaatgagtgcttctcacaaataataatt 4938173  T
Q  350 tgttgt 355  Q
    ||||||    
T  4938174 tgttgt 4938179  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 4984800 - 4984869
Alignment:
Q  286 gttcactaaattccctttgagaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgt 355  Q
    |||||||||| ||||||| |||| |||||||||||||||| |||| || ||| |  ||||| ||||||||    
T  4984800 gttcactaaactccctttaagaaatgttcttccaaacaataagtgtttatcacaaagaatattttgttgt 4984869  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 350
Target Start/End: Original strand, 22009481 - 22009611
Alignment:
Q  220 tttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttgagaattgttcttcc 318  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||  ||||| |||||||||||  | ||||||||||||||||||||  ||||||||||    
T  22009481 tttatataatggctgaaacttaccactcctcacctcttgtactcatattgaatctcaacaacaaactcttcactaaattccctttgagtgttgttcttcc 22009580  T
Q  319 aaacaatgagtgcttctcatagtgaataattt 350  Q
     ||||| ||||||||||||||  |||||||||    
T  22009581 -aacaacgagtgcttctcataaagaataattt 22009611  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 333
Target Start/End: Original strand, 22055396 - 22055544
Alignment:
Q  191 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaac 283  Q
    ||||||||||||||||||||| ||||      |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  22055396 aaaaactatttgttctcaatattgatattgattgctttatataatggctgaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 22055495  T
Q  284 ttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 333  Q
     | ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  22055496 ctcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 22055544  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 333
Target Start/End: Original strand, 22020899 - 22021050
Alignment:
Q  191 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa- 282  Q
    ||||||||||||||||||||| ||||      |||||||||||||| | ||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  22020899 aaaaactatttgttctcaatattgatattgattgctttatataatggcagaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 22020998  T
Q  283 --cttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 333  Q
      ||| ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  22020999 ctcttcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 22021050  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 350
Target Start/End: Original strand, 44309763 - 44309893
Alignment:
Q  220 tttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttgagaattgttcttcc 318  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||  ||||| |||||||||||  | ||||||||||||||||||||  ||||||||||    
T  44309763 tttatataatggctgaaacttaccactcctcacctcttgtactcatattgaatctcaacaacaaactcttcactaaattccctttgagtgttgttcttcc 44309862  T
Q  319 aaacaatgagtgcttctcatagtgaataattt 350  Q
     ||||| ||||||||||||||  |||||||||    
T  44309863 -aacaacgagtgcttctcataaagaataattt 44309893  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 333
Target Start/End: Original strand, 44365781 - 44365929
Alignment:
Q  191 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaac 283  Q
    ||||||||||||||||||||| ||||      |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  44365781 aaaaactatttgttctcaatattgatattgattgctttatataatggctgaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 44365880  T
Q  284 ttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 333  Q
     | ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  44365881 ctcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 44365929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 333
Target Start/End: Original strand, 44331007 - 44331158
Alignment:
Q  191 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa- 282  Q
    ||||||||||||||||||||| ||||      |||||||||||||| | ||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  44331007 aaaaactatttgttctcaatattgatattgattgctttatataatggcagaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 44331106  T
Q  283 --cttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 333  Q
      ||| ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  44331107 ctcttcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 44331158  T

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