View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12286_high_5 (Length: 218)
Name: NF12286_high_5
Description: NF12286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12286_high_5 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 36941440 - 36941657
Alignment:
| Q |
1 |
cacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccacaatgt |
100 |
Q |
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| T |
36941440 |
cacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccacaatgt |
36941539 |
T |
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| Q |
101 |
ttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggccct |
200 |
Q |
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| T |
36941540 |
ttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggccct |
36941639 |
T |
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| Q |
201 |
tcctgtggtagcacattc |
218 |
Q |
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|||||||||||||||||| |
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| T |
36941640 |
tcctgtggtagcacattc |
36941657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 36939684 - 36939461
Alignment:
| Q |
1 |
cacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccacaatgt |
100 |
Q |
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| T |
36939684 |
cacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagcccccaaacccactccacaatat |
36939585 |
T |
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| Q |
101 |
ttatttcattttcttgagcatta------attattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttact |
194 |
Q |
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| T |
36939584 |
gtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactatacacgtctgtttctttact |
36939485 |
T |
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| Q |
195 |
ggcccttcctgtggtagcacattc |
218 |
Q |
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| T |
36939484 |
agctcttcctgtggtagcacattc |
36939461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 36949775 - 36949695
Alignment:
| Q |
133 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
213 |
Q |
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| T |
36949775 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36949695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 36959909 - 36959829
Alignment:
| Q |
133 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
213 |
Q |
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| T |
36959909 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36959829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
145 |
gctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcct |
204 |
Q |
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| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 28294221 - 28294281
Alignment:
| Q |
147 |
tatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtg |
207 |
Q |
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| T |
28294221 |
tatctccaaagcaactatcccaaaactatacacatctgactctttacttgccctacctgtg |
28294281 |
T |
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