View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12286_low_2 (Length: 345)
Name: NF12286_low_2
Description: NF12286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12286_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 10046992 - 10046679
Alignment:
| Q |
19 |
atcatagctttcagcaagtatataatctagtgctggatcagtaactgccaatgcaattcctctctcggcaagacgactagctacatccttcatttgcaac |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10046992 |
atcatagctttcagcaagtatataatctagtgctggatcagtaactgccaatgcaattcctctctcggcaagacgactagcaacatccttcatttgcaac |
10046893 |
T |
|
| Q |
119 |
cttgcaaccttcctcagttgctcgtgagatagtggatcgaatacaacaacttcgtccagcctattcaacaattctggcctgaaatgcttttttacttcca |
218 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10046892 |
cttgcaaccttcctcaattgctcgtgagatagtggatcgaatacaacaacttcgtctagcctattcaacaattctggccggaaatgcttttttacttcca |
10046793 |
T |
|
| Q |
219 |
gcattactcgatcacgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgctcggcgccgaggtttgaggtcatgataatgactgtgtt |
318 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10046792 |
gcattactcggtcgcgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgatcggcgccgaggtttgaggtcatgataatgactgtgtt |
10046693 |
T |
|
| Q |
319 |
cctaaaatccacag |
332 |
Q |
| |
|
|||||||||||||| |
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|
| T |
10046692 |
cctaaaatccacag |
10046679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 38708602 - 38708301
Alignment:
| Q |
19 |
atcatagctttcagcaagtatataatcta-----gtgctggatcagtaactgccaatgcaattcctctctcggcaagacgactagctacatccttcattt |
113 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38708602 |
atcatagctttcagcaagtatataatctaatctagtgctggatctgtaactgccagtgcaattcctctctcagcaagacgactagctacatccttcattt |
38708503 |
T |
|
| Q |
114 |
gcaaccttgcaaccttcctcagttgctcgtgagatagtggatcgaatacaacaacttcgtccagcctattcaacaattctggcctgaaatgcttttttac |
213 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||| |||| |||||||||||||| |||||| ||||||||||||||| |||||||| |||||||| |
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| T |
38708502 |
tcaaccttgcaaccttcctcaattactcatgagatagatgatcaaatacaacaacttcatccagcgaattcaacaattctggtctgaaatgtttttttac |
38708403 |
T |
|
| Q |
214 |
ttccagcattactcgatcacgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgctcggcgccgaggtttgaggtcatgataatgact |
313 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
38708402 |
ttcctgcattactcgatcacgagcaacttgcatggtgcattttcctgaaagtccacttatgagatgctcggcaccaaggtttgaggtcatgataatgact |
38708303 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
38708302 |
gt |
38708301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 45468653 - 45468340
Alignment:
| Q |
19 |
atcatagctttcagcaagtatataatctagtgctggatcagtaactgccaatgcaattcctctctcggcaagacgactagctacatccttcatttgcaac |
118 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||| ||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
45468653 |
atcatagctctcagcaagaatataatctagagctgcatctgttactgccaatgcaattcctctctcagcaagacgactagccacatccttcatttgcaac |
45468554 |
T |
|
| Q |
119 |
cttgcaaccttcctcagttgctcgtgagatagtggatcgaatacaacaacttcgtccagcctattcaacaattctggcctgaaatgcttttttacttcca |
218 |
Q |
| |
|
||||||||||| |||| |||||| || ||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||| || |||||||| |
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|
| T |
45468553 |
cttgcaacctttctcaattgctcatgtgatagaggatcaaatacaacaacttcgtccagtcggttcaacaattctggcctgaaatgccttcttacttcct |
45468454 |
T |
|
| Q |
219 |
gcattactcgatcacgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgctcggcgccgaggtttgaggtcatgataatgactgtgtt |
318 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||||| ||||||||||||||||| | ||||||||| || || ||||| ||||||||||| || || ||||| |
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|
| T |
45468453 |
gcatcactcgatcgcgagcagcttgcatggtacattttcctgaaagtccactcaagagatgctcagcaccaaggttagaggtcatgatgatcacagtgtt |
45468354 |
T |
|
| Q |
319 |
cctaaaatccacag |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45468353 |
tctaaaatccacag |
45468340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 739887 - 740189
Alignment:
| Q |
20 |
tcatagctttcagcaagtatataatctagtgctggatcagtaactgccaatgcaattcctctctcggcaagacgactagctacatccttcatttgcaacc |
119 |
Q |
| |
|
|||||||| || |||||||| ||||||||| || ||| || || ||||| || || ||| |||| ||||||||| ||||||||||||||||||||| || |
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|
| T |
739887 |
tcatagctcacatcaagtataaaatctagtgttgcatctgttacggccaaagcgatgcctttctcagcaagacgattagctacatccttcatttgcatcc |
739986 |
T |
|
| Q |
120 |
ttgcaaccttcctcagttgctcgtgagatagtggatcgaatacaacaacttcgtccagcctattcaacaattctggcctgaaatgcttttttacttccag |
219 |
Q |
| |
|
||||||||||||||| ||||| |||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||| | |
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|
| T |
739987 |
ttgcaaccttcctcaattgcttgtgagaaagagggtcgaatacaacaacttcgtccagccgattcaacaattctggcctgaaatgatttctcacttcctg |
740086 |
T |
|
| Q |
220 |
cattactcgatcacgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgctcggcgccgaggtttgaggtcatgataatgactgtgttc |
319 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
740087 |
cattactttatcgcgagcaacttccatggtacattttcctgaaagtccacttaggagatgctcggaaccaaggtttgaggtcatgataatgactgtgttc |
740186 |
T |
|
| Q |
320 |
cta |
322 |
Q |
| |
|
||| |
|
|
| T |
740187 |
cta |
740189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 42449109 - 42449422
Alignment:
| Q |
19 |
atcatagctttcagcaagtatataatctagtgctggatcagtaactgccaatgcaattcctctctcggcaagacgactagctacatccttcatttgcaac |
118 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||| ||| ||||||||||| | | ||||| ||| |||||||| || |||||||||| ||||||||| |
|
|
| T |
42449109 |
atcatagctctcagcaagtatataatccactgctccatctgtaactgccaacgaagttcctttcttaccaagacgattacctacatccttgatttgcaac |
42449208 |
T |
|
| Q |
119 |
cttgcaaccttcctcagttgctcgtgagatagtggatcgaatacaacaacttcgtccagcctattcaacaattctggcctgaaatgcttttttacttcca |
218 |
Q |
| |
|
|||||||||||||||| ||||| || ||| || |||| |||||| ||||||| | |||| ||||||||||||| || |||||||| | |||||| |
|
|
| T |
42449209 |
cttgcaaccttcctcaattgctggtaagaaagaggattgaatactacaactttggtcagctgattcaacaattctagcaggaaatgctcactgacttcct |
42449308 |
T |
|
| Q |
219 |
gcattactcgatcacgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgctcggcgccgaggtttgaggtcatgataatgactgtgtt |
318 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||| ||||||||||||||||||| |||||| ||||| || ||||| ||||||||||||||||| |||| |
|
|
| T |
42449309 |
gcattactcgatcgtgagctacttggatggtacattttcctgaaagtccacttaagagatgatcggcaccaaggttcgaggtcatgataatgaccatgtt |
42449408 |
T |
|
| Q |
319 |
cctaaaatccacag |
332 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
42449409 |
cgtaaaatccacag |
42449422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 91 - 332
Target Start/End: Original strand, 742051 - 742292
Alignment:
| Q |
91 |
acgactagctacatccttcatttgcaaccttgcaaccttcctcagttgctcgtgagatagtggatcgaatacaacaacttcgtccagcctattcaacaat |
190 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| || |||| |||||| ||||||| | ||| ||||||| |
|
|
| T |
742051 |
acgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaat |
742150 |
T |
|
| Q |
191 |
tctggcctgaaatgcttttttacttccagcattactcgatcacgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgctcggcgccga |
290 |
Q |
| |
|
||| || |||||| | |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| || ||||| | |
|
|
| T |
742151 |
tctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaa |
742250 |
T |
|
| Q |
291 |
ggtttgaggtcatgataatgactgtgttcctaaaatccacag |
332 |
Q |
| |
|
|||| ||||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
742251 |
ggttcgaggtcatgataacgaccgtgttcgtaaaatccacag |
742292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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