View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12287_high_1 (Length: 358)
Name: NF12287_high_1
Description: NF12287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12287_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 44034723 - 44034390
Alignment:
| Q |
14 |
gtgctctctctatttgttgtccatttggcattttatcaatctcaataacataaggctcagtaccaaaaccccttatcagttccctcactgtgtgactcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44034723 |
gtgctctctctatttgttgtccatttggcattttatcaatctcaataacataaggctcagtaccaaaaccccttatcagttccctcactgtgtgactcat |
44034624 |
T |
|
| Q |
114 |
gggacaagtgcttttgctgaacataactactggtttgttctctgttaatgatgccaacaaatccatatttctatgaaggtaggtagcta--tatatt--- |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
44034623 |
gggacaagtgcttttgctgaacataactactggtttgttctctgttaatgatgccaacaaatccat--ttctatgaaggtaggtaggtagctatattatg |
44034526 |
T |
|
| Q |
209 |
--gatgatttaagtgagtttgatttggtttgtagaaatttgagattagaggatgtgtatttataccagaatggattgtttacacatataggagaataaac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44034525 |
atgatgatttaagtgagtttgatttggtttgtagaaatttgagattagaggatgtgtatttataccagaatggattgtttacacatataggagaataaac |
44034426 |
T |
|
| Q |
307 |
atctgaaaaagaataaaccttaaagttgtgccataa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44034425 |
atctgaaaaagaataaaccttaaagttgtgccataa |
44034390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University