View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12287_high_3 (Length: 299)
Name: NF12287_high_3
Description: NF12287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12287_high_3 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 11675693 - 11675991
Alignment:
| Q |
1 |
ctgcaaagacagtgtgtgcattggaaattattccaagactgtcattgagcatgtaattggtaaaatactcctccacctcctgcaccataaaaccatgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11675693 |
ctgcaaagacagtgtgtgcattggaaattattccaagactgtcattgagcatgtaattggtaaaatactcctccacctcctgcaccataaaaccatgtta |
11675792 |
T |
|
| Q |
101 |
tgatttatgaatatgagcactgctatttttcatgaaggatgcttctacaagaaatagaaaaatgtacgaaaattaggatacttagtaagtgttacttccg |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11675793 |
tgatttatgaatattagcactgctatttttcatgaaggatgcttcaacaagaaatagaaaaatgtacgaaaattaggatacttagcaagtgttacttccg |
11675892 |
T |
|
| Q |
201 |
tccacatattattcttccacagatcacattacataagtacaagaaaaaatttcctatggatgtaaatctcaaagaacaatacctcaatctccacatcat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11675893 |
tccacatattattcttccacagatcacattacataagtacaagaaaaaatttcctatgaatgtaaatctcaaagaacaatacctcaatctccacatcat |
11675991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 11683277 - 11683379
Alignment:
| Q |
1 |
ctgcaaagacagtgtgtgcattggaaattattccaagactgtcattgagcatgtaattggtaaaatactcctccacctcctgcaccataaaaccatgtta |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
11683277 |
ctgcaaagacaatgtgtgcattggcaattattccaagactgtcattgagtatgtaattggtaaaatattcctccacctcctgcagcattaaaccatgtta |
11683376 |
T |
|
| Q |
101 |
tga |
103 |
Q |
| |
|
||| |
|
|
| T |
11683377 |
tga |
11683379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11639710 - 11639611
Alignment:
| Q |
1 |
ctgcaaagacagtgtgtgcattggaaattattccaagactgtcattgagcatgtaattggtaaaatactcctccacctcctgcaccataaaaccatgtta |
100 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11639710 |
ctgcaaagactgtgtgtgcattggcaattattccgagactgtcattgagtatataattggtgaaatactcctccacctcctgcaccattaaaccatgtta |
11639611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 11630948 - 11630848
Alignment:
| Q |
1 |
ctgcaaagacagtgtgtgcattggaaattattccaagactgtcattgagcatgtaattggtaaaatactcctccacctcctgcaccataaaaccatgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
11630948 |
ctgcaaagacagtgtgtgcattggcaattattccaagacaatcattgagtatgtaatcggtaaaatacttctgcacttcctgcaccataaaaccatgtta |
11630849 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
11630848 |
t |
11630848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 11630587 - 11630533
Alignment:
| Q |
245 |
aaaaatttcctatggatgtaaatctcaaagaacaatacctcaatctccacatcat |
299 |
Q |
| |
|
||||||| |||| ||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
11630587 |
aaaaattgcctacggatgtaaagctaaaaggacaatacctcaatctccacatcat |
11630533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 11683662 - 11683723
Alignment:
| Q |
235 |
aagtacaagaaaaaatttcctatggatgtaaatctcaaagaacaatacctcaatctccacatcat |
299 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
11683662 |
aagtacaagaaaaaact-cctatggatgtaaatctcaaag--gaatacctcaatctcaacatcat |
11683723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University