View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12287_high_4 (Length: 232)
Name: NF12287_high_4
Description: NF12287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12287_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 3779037 - 3778836
Alignment:
| Q |
17 |
atatataatttgaaagaccaaaccataagccacaaacaatcaactgcagttccatggctaaaacaactcatatagtagtaacttcaattcctgtgtttag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3779037 |
atatataatttgaaagaccaaaccataagccacaaacaatcaactgcagttccatggctaaaacaactcatatagtagtaacttcaattcctgtgtttag |
3778938 |
T |
|
| Q |
117 |
ccaccaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcacttgcatcttccccaccattgatgcacctatctct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3778937 |
ccaccaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcacttgcatcttccccaccattgatgcacctatccct |
3778838 |
T |
|
| Q |
217 |
gc |
218 |
Q |
| |
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|| |
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|
| T |
3778837 |
gc |
3778836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 3718329 - 3718529
Alignment:
| Q |
18 |
tatataatttgaaagaccaaaccataagccacaaacaatcaactgcagttccatggctaaaacaactcatatagtagtaacttcaattcctgtgtttagc |
117 |
Q |
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||||||||||||| ||||||||||||| |||||||| |||||||||| || |||||||||| ||||||||||| |||| |||||||||| | |||||| |
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| T |
3718329 |
tatataatttgaatgaccaaaccataaaccacaaacgatcaactgcaatttcatggctaaaggaactcatatagcagtagtttcaattcctctatttagc |
3718428 |
T |
|
| Q |
118 |
caccaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcacttgcatcttccccaccattgatgcacctatctctg |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
3718429 |
caccaaagttctattattgagttttgcaagagattaattcatctccatcaccacattcatgtcacttgcatcttccccaccattgatgcaccaatccctg |
3718528 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
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|
| T |
3718529 |
c |
3718529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 3771376 - 3771175
Alignment:
| Q |
17 |
atatataatttgaaagaccaaaccataagccacaaacaatcaactgcagttccatggctaaaacaactcatatagtagtaacttcaattcctgtgtttag |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||| |||| |||||||||| | ||||| |
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| T |
3771376 |
atatataatttgaatgaccaaaccataagccacaaacgatcaactgcaattctatggctaaaggaactcatatagcagtagtttcaattcctctatttag |
3771277 |
T |
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| Q |
117 |
ccaccaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcacttgcatcttccccaccattgatgcacctatctct |
216 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||| || |
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| T |
3771276 |
ccaccaaagttctattattgagttctgcaagagactaattcatctccatcaccacattcatatcacttgcatcttctccactattgatgcaccaatccct |
3771177 |
T |
|
| Q |
217 |
gc |
218 |
Q |
| |
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|| |
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|
| T |
3771176 |
gc |
3771175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 3706868 - 3707020
Alignment:
| Q |
66 |
ttccatggctaaaacaactcatatagtagtaacttcaattcctgtgtttagccaccaaagttctattattgagttttgcaagagactaattcatctccat |
165 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3706868 |
ttccatggctaaaacaactcatatagcagtagtttcaatccctctatttagccatcaaagttctattattgagttttgcaagagactaattcatctccat |
3706967 |
T |
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| Q |
166 |
caccacattcatgtcacttgcatcttccccaccattgatgcacctatctctgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3706968 |
caccacattcatgtcacttgcatcttccccaccattgatgcacctatccctgc |
3707020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 3700191 - 3700339
Alignment:
| Q |
70 |
atggctaaaacaactcatatagtagtaacttcaattcctgtgtttagccaccaaagttctattattgagttttgcaagagactaattcatctccatcacc |
169 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| | ||| | || ||||||||| || || |||||||| ||||||||||| |||||||||||| | |
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| T |
3700191 |
atggctaaaacaactcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctccataaat |
3700290 |
T |
|
| Q |
170 |
acattcatgtcacttgcatcttccccaccattgatgcacctatctctgc |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
3700291 |
acattcatatcacttgcatcttccccactattgatgcacctatccctgc |
3700339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 33006197 - 33006068
Alignment:
| Q |
84 |
tcatatagtagtaacttcaattcctgtgtttagccaccaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcact |
183 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||| || |||| | |||||||| ||||||||||| ||||| ||||| ||||| | || ||||| |
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| T |
33006197 |
tcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcact |
33006098 |
T |
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| Q |
184 |
tgcatcttccccaccattgatgcacctatc |
213 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
33006097 |
tgcatcttccccaccattgatgcacctatc |
33006068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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