View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12287_low_2 (Length: 355)
Name: NF12287_low_2
Description: NF12287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12287_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 7157159 - 7156839
Alignment:
| Q |
1 |
caccgtcggagaaaacgtccgccatcatgaa-ttgagcttctccactgaaaccctaacccta------gcttcaccatcttcctcctctgctattcctgg |
93 |
Q |
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| T |
7157159 |
caccgttggagaaaacatccgccatcatgaaattgagcttctccactgaaaccctaaccctaaccctagcttcaccatcttcctcctctgctattcctgg |
7157060 |
T |
|
| Q |
94 |
agattcccttccgactcttccattcgatctcgttgtagagattctctcccggcttcccgtgaagtctctgatgcaactccaatgcgtctgtaagtaatgg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7157059 |
agattcccttccgactcttccattcgatctcgttgtagagattctctcccggcttcccgtgaagtctctcatgcaactccaatgcgtctgtaagtaatgg |
7156960 |
T |
|
| Q |
194 |
aaatatctcatctccgatcacaaattcgccaaaaagcaccttcatgtgtcaaccacgcgcccacgtctcctcgtctcaagtttcacccatttctcactcg |
293 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7156959 |
aaatctctcatcttcgatcacaaattcgccaaaaagcaccttcatgtgtcaaccacgcgcccacgtctcctcgtctcaagtttcacccatttctcactcg |
7156860 |
T |
|
| Q |
294 |
aggtcgaccacatgtcttacc |
314 |
Q |
| |
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||||||||||||||||||||| |
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| T |
7156859 |
aggtcgaccacatgtcttacc |
7156839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 11236881 - 11237033
Alignment:
| Q |
102 |
ttccgactcttccattcgatctcgttgtagagattctctcccggcttcccgtgaagtctctgatgcaactccaatgcgtctgtaagtaatggaaatatct |
201 |
Q |
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| T |
11236881 |
ttccgactcttccattcgagatcgtcgcggagattctctccaggctgccagtcaaatacctcatgcaactccaatccgtctgtaagtcctggaaatctct |
11236980 |
T |
|
| Q |
202 |
catctccgatcacaaattcgccaaaaagcaccttcatgtgtcaaccacgcgcc |
254 |
Q |
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| T |
11236981 |
catctccgatcccaaattcatcaaaaaacaccttcacgtgtccaccacgcgcc |
11237033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 251
Target Start/End: Complemental strand, 7169563 - 7169404
Alignment:
| Q |
92 |
ggagattcccttccgactcttccattcgatctcgttgtagagattctctcccggcttcccgtgaagtctctgatgcaactccaatgcgtctgtaagtaat |
191 |
Q |
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||||||| |||||| |||||||||||||| | || | || ||||||||| ||||||| || |||| ||| ||||||||||||| ||||||||||| | |
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| T |
7169563 |
ggagatttccttcccactcttccattcgagattgtggcggaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcct |
7169464 |
T |
|
| Q |
192 |
ggaaatatctcatctccgatcacaaattcgccaaaaagcaccttcatgtgtcaaccacgc |
251 |
Q |
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|
| T |
7169463 |
ggaaatctcttatctccgattcaaaattcgctaagaatcaccttcgcttgtcaaccacgc |
7169404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 24722544 - 24722675
Alignment:
| Q |
101 |
cttccgactcttccattcgatctcgttgtagagattctctcccggcttcccgtgaagtctctgatgcaactccaatgcgtctgtaagtaatggaaatatc |
200 |
Q |
| |
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||||| ||||||||||||||||| || |||| ||||||| ||||||| || ||||| || |||||| || |||| ||||| |||| ||||||| |
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| T |
24722544 |
cttcccactcttccattcgatcttgtgttagaaattctctataggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatcat |
24722643 |
T |
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| Q |
201 |
tcatctccgatcacaaattcgccaaaaagcac |
232 |
Q |
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|||||||| ||| |||||||||||||||||| |
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|
| T |
24722644 |
tcatctcccatcctaaattcgccaaaaagcac |
24722675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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