View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12287_low_6 (Length: 205)
Name: NF12287_low_6
Description: NF12287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12287_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 11675715 - 11675528
Alignment:
| Q |
1 |
caatgcacacactgtctttgcagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaatagcagttgattttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11675715 |
caatgcacacactgtctttgcagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaatagcagttgattttcca |
11675616 |
T |
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| Q |
101 |
aaaaccggtatcccagcagttataccccctcatcttttcgccaaagaatatccagacttcatggaaaagcctgacaaaaccacctaca |
188 |
Q |
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| T |
11675615 |
aaaaccggtatcccagcagttataccccctcatcttttcgccaaagaatatccagacttcatggaaaagcctgacaaaaccacctaca |
11675528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 11683299 - 11683112
Alignment:
| Q |
1 |
caatgcacacactgtctttgcagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaatagcagttgattttcca |
100 |
Q |
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||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11683299 |
caatgcacacattgtctttgcagataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagtagcagttgattttcca |
11683200 |
T |
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| Q |
101 |
aaaaccggtatcccagcagttataccccctcatcttttcgccaaagaatatccagacttcatggaaaagcctgacaaaaccacctaca |
188 |
Q |
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| T |
11683199 |
aaaaccggtatcccagcagttatacctcctcatctttttgccaaagaatatccagacttcatggaaaagcctgacaaaaccacctaca |
11683112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 11639688 - 11639867
Alignment:
| Q |
1 |
caatgcacacactgtctttgcagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaatagcagttgattttcca |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
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| T |
11639688 |
caatgcacacacagtctttgcagataaagaacctgctaaagcaatgtctgagccatgtatcgagcttgcaaagctattctcaatagcagttgactttcca |
11639787 |
T |
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| Q |
101 |
aaaaccggtatcccagcagttataccccctcatcttttcgccaaagaatatccagacttcatggaaaagcctgacaaaac |
180 |
Q |
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|| || ||||||||||| |||||||| | | | ||||||||||||||||||||||| |||||||| ||| |||||||||| |
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| T |
11639788 |
aagactggtatcccagccgttatacctcgtgaacttttcgccaaagaatatccagatttcatggagaaggctgacaaaac |
11639867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 11630926 - 11631103
Alignment:
| Q |
1 |
caatgcacacactgtctttgcagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaatagcagttgattttcca |
100 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||| |||| ||||||||||||||||||| ||||||||| |||||| |
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| T |
11630926 |
caatgcacacactgtctttgcagacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaacagcagttgactttcca |
11631025 |
T |
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| Q |
101 |
aaaaccggtatcccagcagttataccccctcatcttttcgccaaagaatatccagacttcatggaaaagcctgacaaa |
178 |
Q |
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||||||||||||||||||| ||||| | | ||||||| ||| |||||||||||| |||||||| |||||||||||| |
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| T |
11631026 |
aaaaccggtatcccagcagaaatacctcgtggtcttttccccacagaatatccagatttcatggagaagcctgacaaa |
11631103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 11683058 - 11683015
Alignment:
| Q |
145 |
agaatatccagacttcatggaaaagcctgacaaaaccacctaca |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11683058 |
agaatatccagacttcatggaaaagcctgacaaaaccacctaca |
11683015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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