View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12288_high_2 (Length: 320)
Name: NF12288_high_2
Description: NF12288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12288_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 379653 - 379347
Alignment:
| Q |
10 |
agatgaatatattgaaatatgagatttgaattgcaagtgttgaatatggcaatgtgttaatctcttgatgatggtaggtgagcacaaacacatcatacgg |
109 |
Q |
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| T |
379653 |
agatgaatatattgaaatatgagattcgaattgcaagtgttgaatatggcaatgtgttaatctcttgatgatggtaggtgagcacaaacacatcatacgg |
379554 |
T |
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| Q |
110 |
accaccacaatattgacccattggttgtggctcctcctcctagaccacaacgactcatcatcatgacatccgtcgcctcctccgccgccacatggtgctg |
209 |
Q |
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| T |
379553 |
accaccacaatattgatccattggttgtggctcctcctcctagaccacaacgactcatcatcatgacatccgtcgcctcctccgcctccacatggtgctg |
379454 |
T |
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| Q |
210 |
gtggggttcaagctcattcaactaaggtggtccagatcaggggcagatcttcttaggagtccatggtagccatggctccccctaaatatggtattaatat |
309 |
Q |
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| T |
379453 |
gtggggttcaagctcattcaactaaggtggtccagatcaggggcaaatcttcttaggagtccatggtaaccatggctccccccaaatatggtattaatat |
379354 |
T |
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| Q |
310 |
tgtatca |
316 |
Q |
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| T |
379353 |
tgtatca |
379347 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 10574361 - 10574315
Alignment:
| Q |
247 |
caggggcagatcttcttaggagtccatggtagccatggctcccccta |
293 |
Q |
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| T |
10574361 |
caggggcggatcttcttgggagcccatggtagccatggctcccccta |
10574315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 42148821 - 42148764
Alignment:
| Q |
253 |
cagatcttcttaggagtccatggtagccatggctccccctaaatatggtattaatatt |
310 |
Q |
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| T |
42148821 |
cagatcttcttaagagcccatggtagccatggctccccccaaatttcgtatttatatt |
42148764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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