View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12288_high_3 (Length: 315)
Name: NF12288_high_3
Description: NF12288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12288_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 51733346 - 51733043
Alignment:
| Q |
1 |
cattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatatctgcatgtcttgaattgaacggccgttaatctgcaaaaaagaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51733346 |
cattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatatctgcatgtcttgaattgaacggccgttaatctgcaaaaaagaatt |
51733247 |
T |
|
| Q |
101 |
gattcatcaataggccgtatctaggagctttgtagcaccgacacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51733246 |
gattcatcaataggccatatctaggagctttgtagcaccgacacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggt |
51733147 |
T |
|
| Q |
201 |
gtcaacctgtcagtatcgtattcggtgtctgtgtcggtgcttcatagtttaagagtcacagggtggtccccatattcaagttgatagctcacccgcatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51733146 |
gtcaacctgtcagtatcgtattcggtgtctgtgtcggtgcttcatagtttaagagtcacagggtggtccccatattcatgttgatagctcacccgcatct |
51733047 |
T |
|
| Q |
301 |
gtgc |
304 |
Q |
| |
|
|||| |
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| T |
51733046 |
gtgc |
51733043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 18268002 - 18268063
Alignment:
| Q |
141 |
acacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgt |
202 |
Q |
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| T |
18268002 |
acacaacaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgt |
18268063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 356174 - 356081
Alignment:
| Q |
1 |
cattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatatctgcatgtcttgaattgaacggccgttaatctgcaaaaa |
94 |
Q |
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||||| |||| | |||||||| ||||| ||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||||||||| |
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| T |
356174 |
cattcgtcacacgttcaacaatcacaattggtatacgtaaaggatctccaaacatttgcatgtcttgaattgattggttgttaatctgcaaaaa |
356081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 17831566 - 17831622
Alignment:
| Q |
179 |
attttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtc |
235 |
Q |
| |
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|||||||||| |||||| ||||||| | ||||||| |||||| ||||||||||||| |
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| T |
17831566 |
attttctcaaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtgtc |
17831622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 4323900 - 4323960
Alignment:
| Q |
175 |
ttctattttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtc |
235 |
Q |
| |
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||||||||||| || ||||||||| ||||||| |||||||||||| ||||||||| ||||| |
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|
| T |
4323900 |
ttctattttcttaaattattatcgttgtcaacgtgtcagtatcgtgttcggtgtccgtgtc |
4323960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 7936964 - 7936883
Alignment:
| Q |
131 |
tgtagcaccgacacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgtcaacctgtcagt |
214 |
Q |
| |
|
|||||||| |||| |||||||||||| || | || ||||||||||||||||||||| ||||| |||||||||| ||||||| |
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| T |
7936964 |
tgtagcactgacatgacaccgacacatgtgctgacattcaattattctattttctca--ttattgccggtgtcaacatgtcagt |
7936883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 9483437 - 9483382
Alignment:
| Q |
150 |
cgacacatctggtaacgttcaattattctattttctcaagttattatcggtgtcaa |
205 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
9483437 |
cgacacatatggttacattcaattattctattttctcaaattattattggtgtcaa |
9483382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 31924462 - 31924417
Alignment:
| Q |
167 |
ttcaattattctattttctcaagttattatcggtgtcaacctgtca |
212 |
Q |
| |
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||||||| ||||||||||| || ||||||||||||||||| ||||| |
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| T |
31924462 |
ttcaattgttctattttcttaaattattatcggtgtcaacgtgtca |
31924417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 28452649 - 28452602
Alignment:
| Q |
138 |
ccgacacaacaccgacacatctggtaacgttcaattattctattttct |
185 |
Q |
| |
|
||||||||||||| |||||| ||||||| |||||||||| |||||||| |
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| T |
28452649 |
ccgacacaacaccaacacatgtggtaacattcaattattttattttct |
28452602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 41542507 - 41542562
Alignment:
| Q |
180 |
ttttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtc |
235 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| || ||||||| ||||| |
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| T |
41542507 |
ttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtc |
41542562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 19625927 - 19625975
Alignment:
| Q |
140 |
gacacaacaccgacacatctggtaacgttcaattattctattttctcaa |
188 |
Q |
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|||||||||| ||||||| |||| || ||||||||||| |||||||||| |
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| T |
19625927 |
gacacaacactgacacatgtggttacattcaattattccattttctcaa |
19625975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 22402446 - 22402367
Alignment:
| Q |
141 |
acacaacaccgacacatctggtaacgttcaatta-ttctattttctcaagttattatcggtgtcaacctgtcagtatcgt |
219 |
Q |
| |
|
|||| |||||||||||| |||| || |||||| | |||||||||||||| |||||| |||| || || |||||||||||| |
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|
| T |
22402446 |
acacgacaccgacacatgtggttacattcaatcacttctattttctcaatttattaccggtctctacatgtcagtatcgt |
22402367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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