View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12288_low_1 (Length: 511)
Name: NF12288_low_1
Description: NF12288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12288_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 44104308 - 44104791
Alignment:
| Q |
8 |
gaacctgtgatgataaaatgagacaataccagtcgacaaataaatcaatatctaagaaattggtacaaagttgaagatgcagaagcaagaatatagggct |
107 |
Q |
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| T |
44104308 |
gaacttgtgatgataaaatgagacaataccagtcgacaaataaatcaatatctaagaaattggtacaaagttgaagatgcagaagcaagaatatagggct |
44104407 |
T |
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| Q |
108 |
gatgtaaaataacaaaaataggggtaaaaagaaagcttgttttatcctatatattccaaattggaggaaaaagaacaatggggaaagacaatggaatgag |
207 |
Q |
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| T |
44104408 |
gatgtaaaataacaaaaatagcggtaaaaagaaagcttgttttatcctatatattccaaattggaggaaaaaga-------------acaatggaatgag |
44104494 |
T |
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| Q |
208 |
atgaaatggatttcatcatatatcactctattccactaatttttc------------------accacattccataccactccattccatc----atatt |
285 |
Q |
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| T |
44104495 |
atgaaatggatttcatcatatatcactctattccactaatttttcaaaaatttgaacaacggaaccacattccataccactccattccatcatatatatt |
44104594 |
T |
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| Q |
286 |
tcatcaatacaaacaaagtcttaagagagttccaatgatcataattcaaatctcagtgaatnnnnnnnntactaacatgtcaataaatattctaaagaat |
385 |
Q |
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| T |
44104595 |
tcatcaatacaaacaaagtcttaagagagttccaatgatcataattcaaatctcagtgaataaaaaatatactaacatgtcaataaatattctaaagaat |
44104694 |
T |
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| Q |
386 |
tgtataaaaataatagtgataatagaaataaggaaaaagcaatccaaatttgtgtatgggctggaccagttatgttatctcagttttacaagaataa |
482 |
Q |
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| T |
44104695 |
tgtataaaaataatagtgataatagaaataaggaaaaagcaatccaaatttgtgtatgggctggaccagttatgttatctcagttttacaagaataa |
44104791 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 5092252 - 5092296
Alignment:
| Q |
207 |
gatgaaatggatttcatcatatatcactctattccactaattttt |
251 |
Q |
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| T |
5092252 |
gatggaatggatttcatcatataccactccattccactcattttt |
5092296 |
T |
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