View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12289_low_2 (Length: 540)
Name: NF12289_low_2
Description: NF12289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12289_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 111 - 395
Target Start/End: Complemental strand, 40511473 - 40511184
Alignment:
| Q |
111 |
acccatttcataagttacaagtctctacgtaccaagagtaaattataagtttctgatagatgttgtttgttgtaatatat---gtattatactattatgt |
207 |
Q |
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| T |
40511473 |
acccatttcataagttacaagtctctacgtaccaagagtaaattataagtttctgatagatgttgtttgttgtaatatattatgtattttactattatgt |
40511374 |
T |
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| Q |
208 |
attatgagatgttgatttatgtgcattacttatc--acaagtcagtgaagccaccatgacatggttgggattgagttcaaatggtaccagagcttccttg |
305 |
Q |
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| T |
40511373 |
attatgagaggttgatttatgtgcattacttatctcacaaatcagtgaagccaccatgacatggttgggattgagttcaaatgggaccagagcttccttg |
40511274 |
T |
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| Q |
306 |
gtcatctctgtcatagctttctctttgctcgtattaacacttagcttaaactctggtcattttgattggttatcaaaagggaatattgta |
395 |
Q |
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| T |
40511273 |
gtcatctctgtcatagctttctctttgctcgtattaacacttagcttaaactctggtcattttgattggttatcaaaagggaatattgta |
40511184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 369 - 531
Target Start/End: Complemental strand, 40511183 - 40511017
Alignment:
| Q |
369 |
gattggttatcaaaagggaatattgtactaagtcaaagaaatcaaagcaccatgtgtaatgtcacaaatcttggtaatatcaatctctacatcttatgtt |
468 |
Q |
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| T |
40511183 |
gattggttttcaaaagggaatattgtactaagtcaaagaaatcaaagcaccatgtgtaatgtgacaaatcttggtaatatcaatctctacatcttatgtt |
40511084 |
T |
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| Q |
469 |
at----aaatttttatatgataacttttactttactacttaataaaaatattcaaatccacaggttc |
531 |
Q |
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| T |
40511083 |
ataaataaatttttatatgataacttttactttactaattaataaaaatgttcaaatctacaggttc |
40511017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 45375258 - 45375218
Alignment:
| Q |
359 |
tggtcattttgattggttatcaaaagggaatattgtactaa |
399 |
Q |
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| T |
45375258 |
tggtcattttgaatggttttcaaaaggtaatattgtactaa |
45375218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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