View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12289_low_3 (Length: 336)
Name: NF12289_low_3
Description: NF12289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12289_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 15191718 - 15191957
Alignment:
| Q |
18 |
ctactatctactattctatgcaaaacagaagctttctaactgaagtacacatcaaaagttaaaatatcagcaataatgattcataatttaaccaaagaag |
117 |
Q |
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| T |
15191718 |
ctactatctactattctatgcaaaacagaagctttctaactgaagtacacatcaaaagttaaaatatcagcaataatgattcataatttaaccaaagaag |
15191817 |
T |
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| Q |
118 |
aaaggnnnnnnnnnnnnnccgaacttgcaatgacgaagagactcatagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcat |
217 |
Q |
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| T |
15191818 |
aaaggaaaaagaaaaaaaccgaacttgcaatgacgaagagactcgtagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcat |
15191917 |
T |
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| Q |
218 |
cactgcagcatccaacaaggagatatgtgtttggaaacct |
257 |
Q |
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| T |
15191918 |
cactgcagcatccaacaaggagatatgtattcggaaacct |
15191957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 24188708 - 24188610
Alignment:
| Q |
140 |
acttgcaatgacgaagagactcatagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaagga |
238 |
Q |
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| T |
24188708 |
acttgcagtgacgaagggactcatagcgttcttgctcattcataacagttttacccttttacttgtgtgtgatctcatcactgcagcatccaacaagga |
24188610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 36915998 - 36916112
Alignment:
| Q |
140 |
acttgcaatgacgaagagactcatagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaaggag |
239 |
Q |
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| T |
36915998 |
acttgcagtgacggagagactcataacgttcatcttcagtcataaccgttttgcctttatacttatgtgtcaccgcatcgctgcagcatccaacaagaag |
36916097 |
T |
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| Q |
240 |
atatgtgtttggaaa |
254 |
Q |
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| T |
36916098 |
atacgtgttcggaaa |
36916112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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