View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12289_low_4 (Length: 295)
Name: NF12289_low_4
Description: NF12289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12289_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 26537384 - 26537115
Alignment:
| Q |
10 |
agatgaaagccgaaagttaaaacaaaggattggatttaaaaattgtttgatcttcgacacaaagcctactactagtgacggtcggataaatatagttaaa |
109 |
Q |
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| T |
26537384 |
agatgaaagccgaaagttaacacaaaggattggatttaaaaattgtttgatcttcgacacaaagcctactactagtgacggtcggataaatatagttaaa |
26537285 |
T |
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| Q |
110 |
tttcaattgactcgagaaataaaatatcagatttttgctctcaaaccagcaattcaccaggcattcctcaattttgtaccgagtaagatgagcgaggtag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26537284 |
tttcaattgactcgagaaataaaatatcagatttttgctctcaaaccagcaattcaccaggcattcctcaattttgtaccgagtaacatgagcgaggtag |
26537185 |
T |
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| Q |
210 |
atttctggaacaaatacttcaaagctgaatatctccatagtaccaaaaatgctattgcagcagctgctga |
279 |
Q |
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| T |
26537184 |
atttctggaacaaatacttcaaagctgaatatctccatagtaccaaaaatgctattgcagcagctgctga |
26537115 |
T |
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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 40351051 - 40350970
Alignment:
| Q |
195 |
agatgagcgaggtagatttctggaacaaatacttcaaagctgaatatctccatagtaccaaaaatgctattgcagcagctgc |
276 |
Q |
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| T |
40351051 |
agatgagcgaggtagatttctggaacaaatactttaaagctgaatatctccatagtaccaaaaatgctattgcagcagctgc |
40350970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 40355564 - 40355494
Alignment:
| Q |
10 |
agatgaaagccgaaagttaaaacaaaggattggatttaaaaattgtttgatcttcgacacaaagcctacta |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40355564 |
agatgaaagccgaaagttaaaacaaaggattggatttaaaaattctttgatcttcgacacaaagcctacta |
40355494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 40351224 - 40351165
Alignment:
| Q |
137 |
cagatttttgctctcaaaccagcaattcaccaggcattcctcaattttgtaccgagtaag |
196 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
40351224 |
cagatttttgccctcaaaccagcagttcaccaggcattcctcaattttgtacccagtaag |
40351165 |
T |
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