View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_high_1 (Length: 742)
Name: NF1228_high_1
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 302 - 645
Target Start/End: Complemental strand, 11329978 - 11329635
Alignment:
| Q |
302 |
taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac |
401 |
Q |
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| T |
11329978 |
taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac |
11329879 |
T |
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| Q |
402 |
taccatgaaaagagagatgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa |
501 |
Q |
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| T |
11329878 |
taccatgaaaagagagatgatgatgttggcaagcatgctaaggcttcaatactcaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa |
11329779 |
T |
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| Q |
502 |
aagaacatagcttgaagatgaaagaaacaaggacaacgaaacaatttgaagctacttccgagatctcatcacgggctaacaagagttgtaagtttgaaaa |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
11329778 |
aagaacatagcttgaagatgaaagaaacaaggacaacgaaacaatttgaagctacttccgagatctcatcatgggctaacaagagtcgtaagtttgaaaa |
11329679 |
T |
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| Q |
602 |
ggaaagagtattgcatctttcaaagatttatgaggagcaagaca |
645 |
Q |
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| T |
11329678 |
ggaaagagtattgcagctctcaaagatttttgaggagcaagaca |
11329635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 302 - 645
Target Start/End: Complemental strand, 11487999 - 11487656
Alignment:
| Q |
302 |
taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac |
401 |
Q |
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| T |
11487999 |
taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac |
11487900 |
T |
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| Q |
402 |
taccatgaaaagagagatgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa |
501 |
Q |
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| T |
11487899 |
taccatgaaaagagagatgatgatgttggcaagcatgctaaggcttcaatactcaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa |
11487800 |
T |
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| Q |
502 |
aagaacatagcttgaagatgaaagaaacaaggacaacgaaacaatttgaagctacttccgagatctcatcacgggctaacaagagttgtaagtttgaaaa |
601 |
Q |
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| T |
11487799 |
aagaacatagcttgaagatgaaagaaacaaggacaacgaaacaatttgaagctacttccgagatctcatcatgggctaacaagagtcgtaagtttgaaaa |
11487700 |
T |
|
| Q |
602 |
ggaaagagtattgcatctttcaaagatttatgaggagcaagaca |
645 |
Q |
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| T |
11487699 |
ggaaagagtattgcagctctcaaagatttttgaggagcaagaca |
11487656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 11330272 - 11330045
Alignment:
| Q |
5 |
gagtgagatgaagcatcgaagaagagacagggatcatcccaagagggcttctggggatacagaaaaggatagaggttccagaagagaacaacgtaatagg |
104 |
Q |
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|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |
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| T |
11330272 |
gagtgagaaggagaatcgaagaagagacagggatcatcccaagagggcttctggggatacaaaaaaggatagaggttccagaagagaac---gtagtagg |
11330176 |
T |
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| Q |
105 |
gttgagcgagagaaaaataggtttaattatggtaattcaagggggaaagattatgatagagagaaacatagggatagagataagaaggatagggacagtg |
204 |
Q |
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| T |
11330175 |
gttgagcgagagaaaaataggtttaattatggtaattcaagggagaaagattatgatagagagaaacatagggatagagataagaaggatagggacagtg |
11330076 |
T |
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| Q |
205 |
agaagaaaagggagttggagaaagatagtga |
235 |
Q |
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| T |
11330075 |
agaagaaaagggagttggagaaagatagtga |
11330045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 11488293 - 11488066
Alignment:
| Q |
5 |
gagtgagatgaagcatcgaagaagagacagggatcatcccaagagggcttctggggatacagaaaaggatagaggttccagaagagaacaacgtaatagg |
104 |
Q |
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|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |
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| T |
11488293 |
gagtgagaaggagaatcgaagaagagacagggatcatcccaagagggcttctggggatacaaaaaaggatagaggttccagaagagaac---gtagtagg |
11488197 |
T |
|
| Q |
105 |
gttgagcgagagaaaaataggtttaattatggtaattcaagggggaaagattatgatagagagaaacatagggatagagataagaaggatagggacagtg |
204 |
Q |
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| T |
11488196 |
gttgagcgagagaaaaataggtttaattatggtaattcaagggagaaagattatgatagagagaaacatagggatagagataagaaggatagggacagtg |
11488097 |
T |
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| Q |
205 |
agaagaaaagggagttggagaaagatagtga |
235 |
Q |
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| T |
11488096 |
agaagaaaagggagttggagaaagatagtga |
11488066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 318 - 507
Target Start/End: Complemental strand, 37380988 - 37380799
Alignment:
| Q |
318 |
gagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaactaccatgaaaagagag |
417 |
Q |
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||||| |||||||| | ||||||||||| | ||||||| |||||||||| ||||| |||||||||||||| | || | |||||||||||||||| |
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| T |
37380988 |
gagaaagataggtcgagggatagaggaagtaggaaggctcacgaggaagattatgaatcaggtaatcttgatgatagagtagattaccatgaaaagagag |
37380889 |
T |
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| Q |
418 |
atgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaaaagaac |
507 |
Q |
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||| |||||||| ||||||| ||||||||||||| ||||||||||||| |||| || || || |||||| |||||||||||||||||| |
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| T |
37380888 |
atgaggatgttggtaagcatgaaaaggcttcaaaactcaatcaagatgataaagagggggagacttcagcaaacttgtcatcaaaagaac |
37380799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 640
Target Start/End: Complemental strand, 37377620 - 37377569
Alignment:
| Q |
589 |
gtaagtttgaaaaggaaagagtattgcatctttcaaagatttatgaggagca |
640 |
Q |
| |
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||||| |||||||||||||||||||||| || || ||||||| ||||||||| |
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| T |
37377620 |
gtaagcttgaaaaggaaagagtattgcagctctcgaagatttttgaggagca |
37377569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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