View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_high_2 (Length: 617)
Name: NF1228_high_2
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 32793202 - 32793762
Alignment:
| Q |
1 |
attgaatattacatattcacccaaaatc--aatgtattatgtatgagtcatgatttatatcacttatttagtgttaaacatccacnnnnnnnnnnnnnnn |
98 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32793202 |
attgaatattacatattcacccaaaatcctaatgcattatgcatgagtcatgatttatatcacttatttagtgttaaacatccacttttttt-------- |
32793293 |
T |
|
| Q |
99 |
nnnnnatataataatatacgtgatttttactcacacttgacatgctaacagtttgaggctttgaattgactttcattaacgaaattttcagtaattgagt |
198 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || ||||||||||| ||||||||| |
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| T |
32793294 |
-----atataataatatatgtgatttttactcacacttgacatgctaacggtttgaggctttgaattggctttcaatagcgaaattttcaataattgagt |
32793388 |
T |
|
| Q |
199 |
tcttannnnnnnnnnaatgttattcctttctttcatttttaatatttgtttcaatagaataattgtgtatatatttagtttgtgtttttcaaagttcaat |
298 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32793389 |
tcttattttctttttaatgttattcctttctttcatttttaatattcgtttcaatagaataattgtgtatatatttagtttgtgtttttcaaagttcaat |
32793488 |
T |
|
| Q |
299 |
gtaatattataatagaggttaattattgaagagagaaaaacatgtataataagtcaataaatagttctctgtgatcacaactcaattagtgagaacatta |
398 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
32793489 |
gtaatattaatatagaggttaattattgaagagagaaaaacatgtataataagtcaataaatagttctccgtgatcacaactcagttagtgagaacatta |
32793588 |
T |
|
| Q |
399 |
taatatgtaggggttgatgtttaatttgaaccaagatttcttaattattcaccttaacgggtaaaattttggtcactaaactacttgaaattttggtcac |
498 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32793589 |
taatatgtaggggttgatgtttaatttgaaccaagatttctcaattattcatcttaacgggtaaaattttggtcactaaactacttgaaattttggtcac |
32793688 |
T |
|
| Q |
499 |
taagctacttgacannnnnnnnactattacnnnnnnngattaattattcggtcagaagtatcaaaatttatttg |
572 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32793689 |
taagctacttgacattttttttactattacaaaaaaagattaattattcggtcagaagtatcaaaatttatttg |
32793762 |
T |
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