View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_high_25 (Length: 251)
Name: NF1228_high_25
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9319394 - 9319148
Alignment:
| Q |
1 |
cacctgaaaaataatatatgaaacaagtatggctcatgctaactttgtcccgagggaacaaattaaggagcgtaaaaatagaactttgtatttggaatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9319394 |
cacctgaaaaataatatatgaaacaagtatggctcatgctaactttgtcccgagggaacaaattaaggaacgtaaaaatagaactttgtatttggaatga |
9319295 |
T |
|
| Q |
101 |
taaattttgaactttaaaaagttaaatgtataatatccgacacaaattttatatatttggttcacttataatgtgtgccattagaaaacatattatcata |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9319294 |
taaattttgaactttaaaaagttgaatgtataatatccgacacaaattttatatatttggttcacttataacgtgtgccattagaaaacatattatcata |
9319195 |
T |
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| Q |
201 |
cgagagcaagc------aggagcaactcccaatagcatgaagaataa |
241 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9319194 |
cgagagcaagcagaaaaaggagcaactcccaatagcatgaagaataa |
9319148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9349732 - 9349486
Alignment:
| Q |
1 |
cacctgaaaaataatatatgaaacaagtatggctcatgctaactttgtcccgagggaacaaattaaggagcgtaaaaatagaactttgtatttggaatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9349732 |
cacctgaaaaataatatatgaaacaagtatggctcatgctaactttgtcccgagggaacaaattaaggaacgtaaaaatagaactttgtatttggaatga |
9349633 |
T |
|
| Q |
101 |
taaattttgaactttaaaaagttaaatgtataatatccgacacaaattttatatatttggttcacttataatgtgtgccattagaaaacatattatcata |
200 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9349632 |
taaattttgaacttgaaaaagttgaatgtataatatccgacacaaattttatatatttggttcacttataacgtgtgccattagaaaacatattatcata |
9349533 |
T |
|
| Q |
201 |
cgagagcaagc------aggagcaactcccaatagcatgaagaataa |
241 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9349532 |
cgagagcaagcagaaaaaggagcaactcccaatagcatgaagaataa |
9349486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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