View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1228_high_4 (Length: 488)
Name: NF1228_high_4
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 54075228 - 54075697
Alignment:
| Q |
1 |
tacaagctctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccaaaattggtgtttccctcgagattattggagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
54075228 |
tacaagctctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccgaaattggagtttccctcgagattattggagaa |
54075327 |
T |
|
| Q |
101 |
aacatcgtggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggctgttcaaaagtttgggcctccggcccagccca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
54075328 |
aacatcgtggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggcagttcaaaactttgggcctccggcccagccca |
54075427 |
T |
|
| Q |
201 |
aatatttcctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54075428 |
aatatttcctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatatt |
54075527 |
T |
|
| Q |
301 |
gtatgataatggaagcgatgatgatgatgatttggagagaataattaaggagctttgtgaagagggttataatataagcacgttgctttggatttggcct |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54075528 |
gtatgataatggaagc---gatgatgatgatttggagagaataattaaggagcttcgtgaagagggttataatataagcacgttgctttggatttggcct |
54075624 |
T |
|
| Q |
401 |
aagactcaagaagctggattctctcacagtattttgtactcaaaatccaaaggattatgcacttggatgatgt |
473 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54075625 |
aagactcaagaagctggattctcacacagtattttgtactcaaaatccaaaggattatgcacttggatgatgt |
54075697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University