View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_high_5 (Length: 482)
Name: NF1228_high_5
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 104 - 410
Target Start/End: Original strand, 32518457 - 32518763
Alignment:
| Q |
104 |
gcagagaaaaagaagtttcagtccaactttgagattcagaaatatacacaactgaaagataagcactatgtagtatccttatccttgtatgttgtaacca |
203 |
Q |
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| T |
32518457 |
gcagagaaaaagaagtttcagtccaactttgagattcagaaatatacacaactgaaagataagcactatgtagtatccttatccttgtatgttgtaacca |
32518556 |
T |
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| Q |
204 |
cactctggtacctgcaaacgagtccgtataacctgaaaaaagagggacgaagaaacaacatgccacatgagaaagcaagttcttctatgattgatgttaa |
303 |
Q |
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| T |
32518557 |
cactctggtacctgcaaacgagtccgtataacctgaaaaaagagggacggagaaacaacatgccacatgagaaagcaagttcttctatgattgatgttaa |
32518656 |
T |
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| Q |
304 |
aggactcactagaatccaaatttttctccttcaaaagacaaggggggagagttgtagatgaaatggatggattggtagtgttgcagcaacggttgttatt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32518657 |
aggactcactagaatccaaatttttctccttcaaaagacaaggggggagagttgtacatgaaatggatggattggtagtgttgcagcaacggttgttatt |
32518756 |
T |
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| Q |
404 |
gctccaa |
410 |
Q |
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||||||| |
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| T |
32518757 |
gctccaa |
32518763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 412
Target Start/End: Original strand, 32529407 - 32529628
Alignment:
| Q |
198 |
taaccacactctggtacctgcaaacgagtccgtataacctgaaaaaagagggacg---aagaaacaacatgccacatgagaaagcaagttcttctatgat |
294 |
Q |
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| T |
32529407 |
taaccacactctggtacctgcaaacgagtccgtataacctgaaaaa-gaaggatggaaaaaaaacagcatgccacatgagaaagcaacttcttctatgat |
32529505 |
T |
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| Q |
295 |
tg-------atgttaaaggactcactagaatccaaatttttctccttcaaaagacaaggggg-gagagttgtagatgaaatggatggattggtagtgttg |
386 |
Q |
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| T |
32529506 |
tgatatattatgttcaggga--cactagaatccaaa-ttttctctgtcaaaatacaagggggagagagttgtacatgaattggatggagtgagagtaatg |
32529602 |
T |
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| Q |
387 |
cagcaacggttgttattgctccaaga |
412 |
Q |
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| T |
32529603 |
cagcaacttttgatgttgctccaaga |
32529628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 32543905 - 32543947
Alignment:
| Q |
199 |
aaccacactctggtacctgcaaacgagtccgtataacctgaaa |
241 |
Q |
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| T |
32543905 |
aaccacactctggtacctgcaaacgagaccgtataacctgaaa |
32543947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 32524849 - 32524899
Alignment:
| Q |
104 |
gcagagaaaaagaagtttcagtccaactttgagattcagaaatatacacaa |
154 |
Q |
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||||||||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
32524849 |
gcagagaaaaagaagtttcagtcaagctttgagattcagaaagttacacaa |
32524899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 412
Target Start/End: Original strand, 32544021 - 32544122
Alignment:
| Q |
313 |
tagaatccaaatttttctccttcaaaagacaaggggg--gagagttgtagatgaaatggatggattggtagtgttgcagcaacggttgttattgctccaa |
410 |
Q |
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|||| ||||||| |||||||||||||||||||||||| |||| | ||| |||||||||| | || | ||| |||||||||| ||| | ||||||||| |
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| T |
32544021 |
tagagtccaaatctttctccttcaaaagacaagggggcagagattcgtacctgaaatggataggttaggagtattgcagcaacttttgatgttgctccaa |
32544120 |
T |
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| Q |
411 |
ga |
412 |
Q |
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|| |
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| T |
32544121 |
ga |
32544122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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