View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_high_6 (Length: 479)
Name: NF1228_high_6
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 77 - 448
Target Start/End: Original strand, 7025046 - 7025417
Alignment:
| Q |
77 |
gaataatatttgcacagatgaaatttagctaataacataaacaagtagctaataagaagaaaatacaagattcttattcataatagaaaattacatatat |
176 |
Q |
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| T |
7025046 |
gaataatatttgcacagatgaaatttagctaataacataaacaagtagctaataagaagaaaatacaagattcttattcataatagtaaattacatatat |
7025145 |
T |
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| Q |
177 |
taattatgtcaacaatacatgttaagatttctatttctctcatataatggatccgtacaacgcacggcatacacactagtaaacaacnnnnnnnnnnnnn |
276 |
Q |
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| T |
7025146 |
taattatgtcaacaatacatgttaagatttctatttctctcatataattgatccgtacatcgcacggcatgcacactagttaacaaaaaaaaaaagtaaa |
7025245 |
T |
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| Q |
277 |
nncttatgaacacgctcatcatgattcataactttatccggcatcaattcacaagcagtcaaaatccactgattccaaaaccaagtactatcaaaacgta |
376 |
Q |
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| T |
7025246 |
aacttatgaacacactcatcatgattcataactttatccggcatcaattcacaagcagtcaaaatccactgattccaaaaccaagtactatcaaaacgta |
7025345 |
T |
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| Q |
377 |
atggcaaaatgaaaatcaacaacgtaaatttacaacaaatttgatagcattatcaatcaacaaaaagggagc |
448 |
Q |
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| T |
7025346 |
atggcaaaatgaaaatcaacaacgtaaattcacaacaaatttgatagcattatcaatgaacaaaaagggagc |
7025417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 115 - 448
Target Start/End: Original strand, 7039816 - 7040150
Alignment:
| Q |
115 |
aaacaagtagctaataagaagaaaatacaagattcttattcataatagaaaattacatatattaattatgtcaacaatacatgttaagatttctatttct |
214 |
Q |
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| T |
7039816 |
aaacaagtagctaataagaagaaaatacaagattcctattcataatagaaaattacatatattaattatgtgaacaatacaagttaagatttctatttct |
7039915 |
T |
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| Q |
215 |
ctcatataatggatccgtacaacgcacggcatacacactagtaaacaacnnnnnnnnnnnnnnn-cttatgaacacgctcatcatgattcataactttat |
313 |
Q |
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| T |
7039916 |
ctcatataattgatccgtacatcgcacggcatacacactagtaaacaaaaaaaaaaaagtaaaaacttatgaacacactcatcatgattcataactttat |
7040015 |
T |
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| Q |
314 |
ccggcatcaattcacaagcagtcaaaatccactgattccaaaaccaagtactatcaaaacgtaatggcaaaatgaaaatcaacaacgtaaatttacaaca |
413 |
Q |
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| T |
7040016 |
ccggcatcaattcacaagcagtcaaaatccactgattccaaaaccaagtactatcaaaacgtaatggcaaaatgaaaatcaacaacgtaaattcacaaca |
7040115 |
T |
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| Q |
414 |
aatttgatagcattatcaatcaacaaaaagggagc |
448 |
Q |
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| T |
7040116 |
aatttgatagcattatcaatgaacaaaaagggagc |
7040150 |
T |
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