View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_13 (Length: 474)
Name: NF1228_low_13
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 54 - 286
Target Start/End: Complemental strand, 19825188 - 19824954
Alignment:
| Q |
54 |
atatctatgaagattttgcaatctgacccaatatctcagcatttgttcagctgggacccaatgatctctctcacttactttctgacacctcatatttcta |
153 |
Q |
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| T |
19825188 |
atatctatgaagattttgcaatctgacccaatatctcagcatttgttcagctgggacccaatgatctctctcacttactttctgacacctcatatttcta |
19825089 |
T |
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| Q |
154 |
tttcaatgtatgaggcacagtacctttctttttctcct-ggttgcacatattc-actagttcaaatattcactaatcaatgcagatgtaatatatgtttt |
251 |
Q |
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| T |
19825088 |
tttcaatgtatgaggcacagtacctttctttttctcctgggttgcacatattcaactagttcaaatattcactaatcaatgcagatataatatatgtttt |
19824989 |
T |
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| Q |
252 |
aatattagttcatatcttggtcaaatatctgatat |
286 |
Q |
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| T |
19824988 |
aatattagttcttatcttggtcaaatatctgatat |
19824954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 328 - 471
Target Start/End: Complemental strand, 19824911 - 19824769
Alignment:
| Q |
328 |
atctagtccctcttctaaaacaattgtcattttttattataagcaatgtgaagatccaatttgtgtgtaacaattttctcatgaacctatttagtgatnn |
427 |
Q |
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| T |
19824911 |
atctactccctcttctaaaacaattgtcattttttattataagcaatgtgaagatccaatttgtgtgtaacaattttctcatgaacctatttagtgat-a |
19824813 |
T |
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| Q |
428 |
nnnnntaagaaaacttattttcacatcctctttcatctcactcg |
471 |
Q |
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| T |
19824812 |
aaaaataagaaaacttattttcacatcctctttcttctcactcg |
19824769 |
T |
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