View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_15 (Length: 464)
Name: NF1228_low_15
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 20140594 - 20140238
Alignment:
| Q |
1 |
gaatttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgtgaatcctgtgttaatgtggacgaaaaata |
100 |
Q |
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| T |
20140594 |
gaatttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtttattccgtgaatcctgtgttaatgtggacgaaaaata |
20140495 |
T |
|
| Q |
101 |
cgtcaaagatttatcaatactcggtcgtgatttagcacgtgttataatgattgacagctccccgcattcatttgggttccaagtggagaatggaatacca |
200 |
Q |
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| T |
20140494 |
cgtcaaagatttatcaatactcggtcgtgatttagcacgtgttacaatgattgacagctccccgcattcatttgggttccaagtggagaatggaatacca |
20140395 |
T |
|
| Q |
201 |
attgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaatttagtagaagttgatgatgtccgaaccgaaatta |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20140394 |
attgagacttggtttgcagatccttcagataataaattgctttcattgattcctttcttggagagtttagtagaagttgatgatgtccgaaccgaaatta |
20140295 |
T |
|
| Q |
301 |
aaaacaggttcaacctccagaagnnnnnnnttgctgatgcttattaggtgcaatggattt |
360 |
Q |
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| T |
20140294 |
aaaacaggttcaacctccagga---aaaaattgctgatgcttattaggtgcaatggattt |
20140238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 38594028 - 38593908
Alignment:
| Q |
169 |
catttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaattt |
268 |
Q |
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| T |
38594028 |
catttggattccaagtggacaatggaataccaattgagagttggtttgatgatccttcagataaagaattgcttttgttacttcctttcttggaaagttt |
38593929 |
T |
|
| Q |
269 |
agtagaagttgatgatgtccg |
289 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
38593928 |
ggtaggagttgatgatgtccg |
38593908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 38595467 - 38595307
Alignment:
| Q |
3 |
atttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgtgaatcctgtgttaatgtggacgaaaaatacg |
102 |
Q |
| |
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||||||||||| ||||| |||| ||||||||| | |||||||||||||| |||||| |||||||||||||||||||| ||||||| | || ||| |
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| T |
38595467 |
atttatgctgagcaactcctaaacgtgcttgatccgaagcggaagatatttcgccatcgtgtattccgtgaatcctgtgtttatgtggaggggaattacc |
38595368 |
T |
|
| Q |
103 |
tcaaagatttatcaatactcggtcgtgatttagcacgtgttataatgattgacagctcccc |
163 |
Q |
| |
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||||||||||| || | ||||||||||||||||||| |||||| || ||||||| |||||| |
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| T |
38595367 |
tcaaagatttaacagtgctcggtcgtgatttagcacatgttatgataattgacaactcccc |
38595307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 38588505 - 38588385
Alignment:
| Q |
169 |
catttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcagataataaattgctttcattgattcctttcttggagaattt |
268 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||| ||| |||||||| |||||||| ||||| ||||||||| ||| ||||||||||||||| ||| |
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| T |
38588505 |
catttggattccaagtggacaatggaataccaattaagagttggtttggcgatccttcggataaagaattgcttttattacttcctttcttggagagttt |
38588406 |
T |
|
| Q |
269 |
agtagaagttgatgatgtccg |
289 |
Q |
| |
|
|||| ||||||||||||||| |
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| T |
38588405 |
ggtaggagttgatgatgtccg |
38588385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 38589152 - 38588993
Alignment:
| Q |
3 |
atttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgtgaatcctgtgttaatgtggacgaaaaatacg |
102 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| | || ||| |
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| T |
38589152 |
atttatgctgagcaactcctaaatttgcttgatccaaagcggaagatatttcgccatcgtgtattccgtgaatcttgtgttaaagtggaggggaattacc |
38589053 |
T |
|
| Q |
103 |
tcaaagatttatcaatactcggtcgtgatttagcacgtgttataatgattgacagctccc |
162 |
Q |
| |
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||||||||||| || | || ||| |||||||||||| |||||| || ||||||| ||||| |
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| T |
38589052 |
tcaaagatttaacagtgcttggttgtgatttagcacatgttatgataattgacaactccc |
38588993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 15835956 - 15835801
Alignment:
| Q |
129 |
gatttagcacgtgttataatgattgacagctccccgcattcatttgggttccaagtggagaatggaataccaattgagacttggtttgctgatccttcag |
228 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||| |||| |||| |||||||||||||||||| | ||| |||| ||| ||||||| |||||||||||| |
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| T |
15835956 |
gatttagcatgtgttataatggttgaattctccca-cattaattttggttccaagtggagaatgaattactaattaagagttggttttctgatccttcag |
15835858 |
T |
|
| Q |
229 |
ataataaattgctttcattgattcctttcttggagaatttagtagaagttgatgatg |
285 |
Q |
| |
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|| | ||||| ||| |||| ||||||||||| ||| ||| |||| ||||||||||| |
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| T |
15835857 |
atgaagaattgattttattgcttcctttcttgaagagttttgtaggagttgatgatg |
15835801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 15836050 - 15835982
Alignment:
| Q |
3 |
atttatgctgacaaactcttaaataagcttgatccaagccggaagatatttcgtcatcgtctattccgt |
71 |
Q |
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||||||| |||||||||| |||||| |||||| |||||||| || ||||| || |||||||||||||| |
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| T |
15836050 |
atttatgatgacaaactcctaaatatgcttgacccaagccgaaaaatattctgttatcgtctattccgt |
15835982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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