View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_18 (Length: 455)
Name: NF1228_low_18
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 97 - 442
Target Start/End: Complemental strand, 53107548 - 53107202
Alignment:
| Q |
97 |
gattttcccctcttcattcataaattctttcccttgcttttccat--tcacccttcatcatcagtgttagggttttacttcattttcactctctactgta |
194 |
Q |
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| T |
53107548 |
gattttcccctcttcattcataaattctttcccttgctattccatcttcacc-ttcatcatcagtgttagggttttacttcattttcactctctactgta |
53107450 |
T |
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| Q |
195 |
ttcaattttctcattttctgtgcgatttgaaattattcaaaaacagtgtttctctgaatgtattgcagtttcgtcttgaattttgtttcgaattattatg |
294 |
Q |
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| T |
53107449 |
ttcaattttctcattttctgtgcgatttgaaattattcaaaaacagtgtttctctgaatgtattgcagtttcgtcttgaattttgtttcgaattattatg |
53107350 |
T |
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| Q |
295 |
cctgtttgggatggaagtaaagcacatcgatgatcaatcttattcataagcgtaagttaatcagaaactaaaatagagattaatgaactttatccatatt |
394 |
Q |
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| T |
53107349 |
cctgtttgggatggaagtaaagcacatcgatgatcaatctcattcataagcgtaagttaatcagaaactaaaatagagattaatgcactttatccatatt |
53107250 |
T |
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| Q |
395 |
atattatatcatccatggtgttctactgctttgtaaaaaatgcaacag |
442 |
Q |
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| T |
53107249 |
atattatatcatccatagtgtgctactgcattgtaaaaaatgcaacag |
53107202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 378
Target Start/End: Complemental strand, 43920214 - 43920017
Alignment:
| Q |
188 |
tactgtattcaattttctcattttctgtgcgatttgaaattattcaaaaacagtgtttct--------ctgaatgta------ttgcagtttcgtcttga |
273 |
Q |
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| T |
43920214 |
tactgtattcaattttctcattttctgtgcgatttgaagttgttcagaaactgcattttttttactttctgaatgtactactattgtagtttcgtcttca |
43920115 |
T |
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| Q |
274 |
attttgtttcgaattattatgcctgtttgggatggaagtaaagcacatcgatgatcaatcttattcataagcgtaagttaatcagaaactaaaatagaga |
373 |
Q |
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| T |
43920114 |
attttgtttt-aattattatacctgtttgtgatggaagtaaaactcattgatgatcaatctcattca------taacttaattagaaactaaaatagaga |
43920022 |
T |
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