View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1228_low_2 (Length: 816)
Name: NF1228_low_2
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 775; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 775; E-Value: 0
Query Start/End: Original strand, 1 - 787
Target Start/End: Complemental strand, 43243146 - 43242360
Alignment:
| Q |
1 |
tatgacagctgcaaccaaaaatacaatgtaccaataccaccttcagaggcctccacgacatcaagcatttcttgccagctctcagacttgacatccttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43243146 |
tatgacagctgcaaccaaaaatacaatgtaccgataccaccttcagaggcctccacgacatcaagcatttcttgccagctctcagacttgacatccttca |
43243047 |
T |
|
| Q |
101 |
agaaatgccgccagcatttattttttgaaatgttataaatgcaacaaactggatcatcatctttgatcttaatcatttcatacaccgactgcaaccacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43243046 |
agaaatgccgccagcatttattttttgaaatgttataaatgcaacaaactggatcatcatctttgatcttaatcatttcatacaccgactgcaaccacat |
43242947 |
T |
|
| Q |
201 |
aatttaaaaagttaataaaaataaaagttcaagtaggcttacagcaagtataatgtcttgcttaatcacatataacagatatttaaaatatcaacatggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43242946 |
aatttaaaaagttaataaaaataaaagttcaagtaggcttacagcaagtataatgtcttgcttaatcacatataacagatatttaaaatatcaacatggg |
43242847 |
T |
|
| Q |
301 |
tgtatcttatgtattcagtacctcatggaatttgttgcctgaagatgaaattatagatacagattctgggtgcaatgtccgcaacaaaccatacaaaata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43242846 |
tgtatcttatgtattcagtacctcatggaatttgttgcctgaagatgaaattatagatacagattctgggtgcaatgtccgcaacaaaccatacaaaata |
43242747 |
T |
|
| Q |
401 |
tcctccacacatgctgatgatttgataatctcaaaggtcgggtcatgcaaaggagggcatttgatgctgctcaaatcttcatgaataataatatgctgga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43242746 |
tcctccacacatgctgatgatttgataatctcaaaggtcaggtcatgcaaaggagggcatttgatgctgctcaaatcttcatgaataataatatgctgga |
43242647 |
T |
|
| Q |
501 |
gtaagcaaccaagtaagaaaaataaatgaggtagttattataatggcaattcatcaaagatgcggaccaagtatggcaaaatgttggaaattagaagaac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43242646 |
gtaagcaaccaagtaagaaaaataaatgaggtagttattataatggcaattcatcaaagatgcggaccaagtatggcaaaatgttggaaattagaagaac |
43242547 |
T |
|
| Q |
601 |
aataccttactagaatgcataatcattttaaatccttcaacaggaaagaacagcgatataaaaggtctcatcataaaccacagttggttaccgagtccaa |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43242546 |
aataccttactagaatgcataatcattttaaatccttcaacaggaaagaacagcgatataaaaggtctcatcataaaccacagttggttaccgagtccaa |
43242447 |
T |
|
| Q |
701 |
cgtctctactttcagttgcagttgaaagagaaattttagcatctgtgaggaggaaaggggtaacaaagtcaaagtacggcatggttt |
787 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43242446 |
cgtctctactttcagttgcagttgaaagagaaattttagcatctgtgaggaggaaaggggtgacaaagtcaaagtacggcatggttt |
43242360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 347 - 778
Target Start/End: Complemental strand, 43234780 - 43234346
Alignment:
| Q |
347 |
gaaattatagatacagattctgggtgcaatgtccgcaacaaaccatacaaaatatcctccacacatgctgatgatttgataatctcaaaggtcgggtcat |
446 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43234780 |
gaaattatagatacagattctgggtgcgttgtccgcaatattccatataaaatatcctccacacatgctgatgatttgataatctcaaaggtcaggtcac |
43234681 |
T |
|
| Q |
447 |
gcaaaggagggcatttgatgctgctcaaatcttcatgaataataatatgctggagtaagcaaccaagtaagaaaaataaatgaggtagttattataatgg |
546 |
Q |
| |
|
||||||| ||| || ||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||| | |||||| |||||| |
|
|
| T |
43234680 |
gcaaaggtgggtataatatgctgctccaatcttcatgaataataatatgctggaataagcagccaagtaagaaaaacaaacgagattgttattgtaatgg |
43234581 |
T |
|
| Q |
547 |
caattcatcaaagatgcggaccaagtatggcaaaatgttggaaattagaagaacaataccttactagaatgcataatcattttaaatccttcaacaggaa |
646 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||||| ||| | |||||||| ||||||| | ||||||||||||| |||| |||||| ||||| |
|
|
| T |
43234580 |
aaattcatcaaggatgcagaccaagtatgccataatgtaaaaaactggaagaacattaccttattggaatgcataatcaatttatatcctt---caggac |
43234484 |
T |
|
| Q |
647 |
agaacagcgatataaaaggtctcatcataaaccacagttggttaccg------agtccaacgtctctactttcagttgcagttgaaagagaaattttagc |
740 |
Q |
| |
|
|||| | |||||| ||| |||| |||||||||||| ||||||| | | |||| ||| ||||||||||| || || ||| ||||||||||| |
|
|
| T |
43234483 |
cgaacctctctataaacggtaccatcttaaaccacagtttgttaccgtctaaaacttcaacatctttactttcagttatagatgcaagggaaattttagc |
43234384 |
T |
|
| Q |
741 |
atctgtgaggaggaaaggggtaacaaagtcaaagtacg |
778 |
Q |
| |
|
|||||||||| | ||||||| | |||||||||||||| |
|
|
| T |
43234383 |
atctgtgaggcgcaaaggggcagtaaagtcaaagtacg |
43234346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 41 - 311
Target Start/End: Complemental strand, 43235121 - 43234851
Alignment:
| Q |
41 |
cttcagaggcctccacgacatcaagcatttcttgccagctctcagacttgacatccttcaagaaatgccgccagcatttattttttgaaatgttataaat |
140 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| ||||||| | |
|
|
| T |
43235121 |
cttcagaggcacccatgacatcaagcatttctttccagctctcaaacttaacacccttcaagaaatgccgccagcatttatttgttgaagtgttatagct |
43235022 |
T |
|
| Q |
141 |
gcaacaaactggatcatcatctttgatcttaatcatttcatacaccgactgcaaccacataatttaaaaagttaataaaaataaaag-ttcaagtaggct |
239 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| || || || |||||||||||| |
|
|
| T |
43235021 |
acagcaaactggatcctcatctttgatcttaatcatttcatacacagactgcaatcacgtaatttaaaaagttaataccaaaaacagtttcaagtaggct |
43234922 |
T |
|
| Q |
240 |
tacagcaagtataatgtcttgcttaatcacatataacagatatttaaaatatcaacatgggtgtatcttatg |
311 |
Q |
| |
|
| || || |||| |||||||||||||| |||||| |||||||||| ||||| |||| ||||||||||| |
|
|
| T |
43234921 |
ttcaatgagcataaagtcttgcttaatcatggataacaaatatttaaaa-atcaatatggatgtatcttatg |
43234851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University