View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_24 (Length: 353)
Name: NF1228_low_24
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 11329955 - 11329635
Alignment:
| Q |
15 |
ataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaactaccatgaaaagagagatgctgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11329955 |
ataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaactaccatgaaaagagagatgatga |
11329856 |
T |
|
| Q |
115 |
tgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaaaagaacatagcttgaagatgaaa |
214 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329855 |
tgttggcaagcatgctaaggcttcaatactcaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaaaagaacatagcttgaagatgaaa |
11329756 |
T |
|
| Q |
215 |
gaaacaaggacaacgaaacaatttgaagctacttccgagatctcatcacgggctaacaagagttgtaagtttgaaaaggaaagagtattgcatctttcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||| |
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| T |
11329755 |
gaaacaaggacaacgaaacaatttgaagctacttccgagatctcatcatgggctaacaagagtcgtaagtttgaaaaggaaagagtattgcagctctcaa |
11329656 |
T |
|
| Q |
315 |
agatttatgaggagcaagaca |
335 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
11329655 |
agatttttgaggagcaagaca |
11329635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 11487976 - 11487656
Alignment:
| Q |
15 |
ataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaactaccatgaaaagagagatgctgc |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11487976 |
ataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaactaccatgaaaagagagatgatga |
11487877 |
T |
|
| Q |
115 |
tgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaaaagaacatagcttgaagatgaaa |
214 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487876 |
tgttggcaagcatgctaaggcttcaatactcaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaaaagaacatagcttgaagatgaaa |
11487777 |
T |
|
| Q |
215 |
gaaacaaggacaacgaaacaatttgaagctacttccgagatctcatcacgggctaacaagagttgtaagtttgaaaaggaaagagtattgcatctttcaa |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||| |
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| T |
11487776 |
gaaacaaggacaacgaaacaatttgaagctacttccgagatctcatcatgggctaacaagagtcgtaagtttgaaaaggaaagagtattgcagctctcaa |
11487677 |
T |
|
| Q |
315 |
agatttatgaggagcaagaca |
335 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
11487676 |
agatttttgaggagcaagaca |
11487656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 37380981 - 37380799
Alignment:
| Q |
15 |
ataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaactaccatgaaaagagagatgctgc |
114 |
Q |
| |
|
||||||| | ||||||||||| | ||||||| |||||||||| ||||| |||||||||||||| | || | ||||||||||||||||||| | |
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| T |
37380981 |
ataggtcgagggatagaggaagtaggaaggctcacgaggaagattatgaatcaggtaatcttgatgatagagtagattaccatgaaaagagagatgagga |
37380882 |
T |
|
| Q |
115 |
tgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaaaagaac |
197 |
Q |
| |
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|||||| ||||||| ||||||||||||| ||||||||||||| |||| || || || |||||| |||||||||||||||||| |
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|
| T |
37380881 |
tgttggtaagcatgaaaaggcttcaaaactcaatcaagatgataaagagggggagacttcagcaaacttgtcatcaaaagaac |
37380799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 37377620 - 37377569
Alignment:
| Q |
279 |
gtaagtttgaaaaggaaagagtattgcatctttcaaagatttatgaggagca |
330 |
Q |
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||||| |||||||||||||||||||||| || || ||||||| ||||||||| |
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| T |
37377620 |
gtaagcttgaaaaggaaagagtattgcagctctcgaagatttttgaggagca |
37377569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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