View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_27 (Length: 307)
Name: NF1228_low_27
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 20140570 - 20140847
Alignment:
| Q |
1 |
tttaagagtttgtcagcataaattctttgaccagcagtaaatacaataatctcaaaaataccagaaacttcgtcaaggaattcttttaggtgaggacgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140570 |
tttaagagtttgtcagcataaattctttgaccagcagtaaatacaataatctcaaaaataccagaaacttcgtcaaggaattcttttaggtgaggacgat |
20140669 |
T |
|
| Q |
101 |
agcgtacatagacatcctcctttatagaattaaaactcacagtgaaagttaagtcatgatcttccttaggttttactagtgtcgaatgcaccaaagttcc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140670 |
agcgtacatagacatcctcctttacagaattaaaactcacagtgaaagttaagtcatggtcttccttaggttttactagtgtcgaatgcaccaaagttcc |
20140769 |
T |
|
| Q |
201 |
atccaagccgagaacaagagtagtaggagggcagcctcgagtctgcctaggtagcaacgtctgtctaaaagtgggaac |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20140770 |
atccaagccgagaacaagagtagtaggagggcagcctcgagtctgcctaggtagcaacatctgtctaaaagtgggaac |
20140847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 38589142 - 38589243
Alignment:
| Q |
13 |
tcagcataaattctttgaccagcagtaaatacaataatctcaaaaataccagaaacttcgtcaaggaattcttttaggtgaggacgatagcgtacataga |
112 |
Q |
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||||||||||| ||||||| ||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
38589142 |
tcagcataaatactttgactagctgtaaatataataatctcaaaaagaccagaaactctctcaaggaattcttttaggtgaggacggcagcgtacataga |
38589241 |
T |
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| Q |
113 |
ca |
114 |
Q |
| |
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|| |
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| T |
38589242 |
ca |
38589243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 38595457 - 38595558
Alignment:
| Q |
13 |
tcagcataaattctttgaccagcagtaaatacaataatctcaaaaataccagaaacttcgtcaaggaattcttttaggtgaggacgatagcgtacataga |
112 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| |||||||||||||| |||||| ||| || || || ||||||||||||||||| |||||||||||| |
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| T |
38595457 |
tcagcataaatactttgactagcggtaaatataataatctcaaaaagaccagagactctctcgagaaactcttttaggtgaggacggcagcgtacataga |
38595556 |
T |
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| Q |
113 |
ca |
114 |
Q |
| |
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|| |
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| T |
38595557 |
ca |
38595558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 38596047 - 38596126
Alignment:
| Q |
199 |
ccatccaagccgagaacaagagtagtaggagggcagcctcgagtctgcctaggtagcaacgtctgtctaaaagtgggaac |
278 |
Q |
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||||||||| | || |||||||| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||| |
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| T |
38596047 |
ccatccaagtccaggacaagagtgataggagggcagctccgagtctgcttaggtagcaacatccgtctaaaagtgggaac |
38596126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 15836028 - 15836140
Alignment:
| Q |
1 |
tttaagagtttgtcagcataaattctttgaccagcagtaaatacaataatctcaaaaataccagaaacttcgtcaaggaattcttttaggtgaggacgat |
100 |
Q |
| |
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|||| |||||||||| ||||||| |||||| || || || ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
15836028 |
tttaggagtttgtcatcataaatactttgagcatcaata--tacaataatctcaaaaagaccaggaacttcgtaaaggaattcttttaggtgaggacgaa |
15836125 |
T |
|
| Q |
101 |
agcgtacatagacat |
115 |
Q |
| |
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| ||||||||||||| |
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|
| T |
15836126 |
accgtacatagacat |
15836140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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