View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_29 (Length: 305)
Name: NF1228_low_29
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 25 - 267
Target Start/End: Original strand, 7901725 - 7901967
Alignment:
| Q |
25 |
aatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaag |
124 |
Q |
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| T |
7901725 |
aatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaag |
7901824 |
T |
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| Q |
125 |
aggaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttccca |
224 |
Q |
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| T |
7901825 |
aggaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccatttcctttccca |
7901924 |
T |
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| Q |
225 |
cagccagctagagaattcgaaattgtcttaggtaagtattata |
267 |
Q |
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| T |
7901925 |
cagccagctagagaattcgaaattgtcttaggtaagtattata |
7901967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 7891321 - 7891544
Alignment:
| Q |
27 |
tatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaagag |
126 |
Q |
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| T |
7891321 |
tatcgcaatggttgggctgatggaccagcttatattactcaatgtccaattcaaactggtggaagctacacatatgacttcaatgtgacaggacaaagag |
7891420 |
T |
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| Q |
127 |
gaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttcccaca |
226 |
Q |
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| T |
7891421 |
gaactttgtggtggcatgctcatattctttggttaagggctactgtttatggtgcaattgttatcatgcctaaaccaggaaccccttttccttttccaca |
7891520 |
T |
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| Q |
227 |
gccagctagagaattcgaaattgt |
250 |
Q |
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| T |
7891521 |
accagctagagaatttgaaattgt |
7891544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 267
Target Start/End: Original strand, 31213708 - 31213946
Alignment:
| Q |
31 |
gtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaagagg--- |
127 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
31213708 |
gtaatggtttggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacaaattcaacgttactgggaaaagaggaac |
31213807 |
T |
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| Q |
128 |
aacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttcccacag |
227 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||| |
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| T |
31213808 |
aacactatggtggcatgcacacattttctggctgagggccactgtctatggggcaatagtaatcatgcctaaacttggaatacc-tttcctttcccacag |
31213906 |
T |
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| Q |
228 |
ccagctagagaattcgaaattgtcttaggtaagtattata |
267 |
Q |
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|||||||||||| || |||||||||||||||||||||||| |
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| T |
31213907 |
ccagctagagaagtcaaaattgtcttaggtaagtattata |
31213946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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