View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1228_low_3 (Length: 784)

Name: NF1228_low_3
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1228_low_3
NF1228_low_3
[»] chr5 (1 HSPs)
chr5 (109-755)||(4996055-4996713)


Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 109 - 755
Target Start/End: Original strand, 4996055 - 4996713
Alignment:
Q  109 caaagggaacagaatctttccaaccattaacttttgtttcttttctttcaaaatctaccatgctgcattagtggttggaaattgaaatagattagagtac 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996055 caaagggaacagattctttccaaccattaacttttgtttcttttctttcaaaatctaccatgctgcattagtggttggaaattgaaatagattagagtac 4996154  T
Q  209 ataaattaaatgtcattttcctttctttagaatgcaccattccttattctcctaagcaaaatattcttactgtagccacctat-------------taca 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||    
T  4996155 ataaattaaatgtcattttcctttctttagaatgcaccattccttattctcctaagcaaaatattcttactgtagccacctatactatagctctattaca 4996254  T
Q  296 aaaatcacaaacaaagagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996255 aaaatcacaaacaaagagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggt 4996354  T
Q  396 tgtccaaatttcttaaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgtt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996355 tgtccaaatttcttaaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgtt 4996454  T
Q  496 cttcacttatggtttctcatgcaaaattcttattgctttcaagtattcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctcca 595  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996455 cttcacttatggtttctcatgcaaaattcttattgatttcaagtaatcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctcca 4996554  T
Q  596 ctttcaaacctttttccaaccgttcatcattgattgcacacttttctccataataatcccnnnnnnnncaagaccttttttgttactatcttcaagttca 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  4996555 ctttcaaacctttttccaaccgttcatcattgattgcacacttttctccataataatccc-aaaaaatcaagaccttttttgttactatcttcaagttca 4996653  T
Q  696 acaactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagaggagcttct 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996654 acaactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagaggagcttct 4996713  T

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