View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_30 (Length: 304)
Name: NF1228_low_30
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 1497107 - 1496833
Alignment:
| Q |
1 |
caatcaagttatagtactattaaccattgatatatttgagnnnnnnnntgcatctattagtttgaaatgattcttatatttaagaacannnnnnnnn-ct |
99 |
Q |
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| T |
1497107 |
caatcaagttatattagtattaaccattgatatatttgaggaaaaaa-tacatctattaatttgaaatgattcttatatttaagaacaatttttttttct |
1497009 |
T |
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| Q |
100 |
tctttaaaatggaactgctatgtagggataaaggtaatattaggtgatatctttcgtttgtacctttaagatagtaagctactataccaatttagttgag |
199 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1497008 |
tctttaaaatggaacttctatgtagggataaaggtaatattaggtgatatctttcgtttgtacctttaagatagtaagctactataccaatttagttgag |
1496909 |
T |
|
| Q |
200 |
tcacagatatcaacagtaatcgtattatggttatcttgataatggacaagcatggaatattatatatggatgtaca |
275 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1496908 |
tcacagatatcaaccgtattcgtattatggttatcttgataatggacaagtatggaatattatatatggatgtaca |
1496833 |
T |
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