View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_35 (Length: 273)
Name: NF1228_low_35
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 5396673 - 5396506
Alignment:
| Q |
30 |
ccaacaatattcaacaatcaaagcaaaacatccgnnnnnnnnagtgagaacatctaattaattaaccataaacaacaattaannnnnnnggaagataaac |
129 |
Q |
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| T |
5396673 |
ccaactatattcaacaatcaaagcaaaacatccattttttttagtgagaacatctaattaattaaccataaacaacaattaatttttttggaagataaac |
5396574 |
T |
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| Q |
130 |
aaaatcaccttttgcaaaagaggaacatgatcatcaatggttgtgtcgtcacattttttggtagcatc |
197 |
Q |
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| T |
5396573 |
aaaatcaccttttgcaaaagaggaacatgatcatcaatggttgtgtcgtcacattttttggtagcatc |
5396506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 5408150 - 5408263
Alignment:
| Q |
76 |
agaacatctaattaattaaccataaacaacaattaannnnnnnggaagataaacaaaatcaccttttgcaaaagaggaacatgatcatcaatggttgtgt |
175 |
Q |
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| T |
5408150 |
agaagatctaattaattaaccataaacaacaattaattttttgaaaggataaataaagtcaccttttgcaaaaaaggaacatgatcatcaatggttgtgg |
5408249 |
T |
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| Q |
176 |
cgtcacattttttg |
189 |
Q |
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| T |
5408250 |
catcacattttttg |
5408263 |
T |
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