View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_38 (Length: 269)
Name: NF1228_low_38
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 15364603 - 15364718
Alignment:
| Q |
44 |
ctgattttcttcttgtgatatcttatttgcattttcactaatatcttctacgagattctttttatcagcttcatttatgttatcttcctctacaaaaatg |
143 |
Q |
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| T |
15364603 |
ctgattttcttcttgtgatatcttatttgcattttcactaatatcttctatgagattctttttatcagcttcacttatattatcttcctctacaaaaatg |
15364702 |
T |
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| Q |
144 |
acaaataaatgttcaa |
159 |
Q |
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| T |
15364703 |
gcaaataaattttcaa |
15364718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 15363181 - 15363295
Alignment:
| Q |
45 |
tgattttcttcttgtgatatcttatttgcattttcactaatatcttctacgagattctttttatcagcttcatttatgttatcttcctctacaaaaatga |
144 |
Q |
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| T |
15363181 |
tgattttcttcttgtgatatctcatttgcatgttcactagtatcttctaggagattctttttatcagtttcacttatgttatcttcttctacaaaaatga |
15363280 |
T |
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| Q |
145 |
caaataaatgttcaa |
159 |
Q |
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| T |
15363281 |
cgaataaattttcaa |
15363295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 12543782 - 12543721
Alignment:
| Q |
183 |
caaatctatctacttcaacaaattttcttcagcatttcaacaaaagaacatgtacctatgat |
244 |
Q |
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| T |
12543782 |
caaatctatctactttaacaaattttcttaagcatttcaacaacagagcatgtacctttgat |
12543721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 15364736 - 15364777
Alignment:
| Q |
181 |
tacaaatctatctacttcaacaaattttcttcagcatttcaa |
222 |
Q |
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| T |
15364736 |
tacaaatctatctacttcaacaaattttcttcaacatttcaa |
15364777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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