View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_40 (Length: 267)
Name: NF1228_low_40
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29010859 - 29011096
Alignment:
| Q |
1 |
agaaagttacttccatgcatcaagattttttgaagtgtagaggtcactttgaagagtaaggttaagcagatggtcaaaaggagattacttacagactagc |
100 |
Q |
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| T |
29010859 |
agaaagttacttccatgcatcaagattttttgaagtgtagaggtcactttgaagagtaaggttaagcagatggtcaaaaggagattacttacagactagc |
29010958 |
T |
|
| Q |
101 |
tcagaactaataattttctcattaatgttcacaactttcacttaactatctaaatttctatcaaggacccaaacccatgtgatgtacatgccttagcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29010959 |
tcagaactaataattttctcattaatgttcacaactttcacttaactatctaaatttctatcaaggacccaaacccatgtgatgtacatgccttagcact |
29011058 |
T |
|
| Q |
201 |
tattttgacaataatttcttattagatgcattttaatc |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29011059 |
tattttgacaataatttcttattagatgcattttaatc |
29011096 |
T |
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