View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_43 (Length: 252)
Name: NF1228_low_43
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2155946 - 2156063
Alignment:
| Q |
1 |
aaccaatttttaaaaaatcaattttgatgaatgtgagaaaaaatgtgtaccttcaatacaatttgagaatcataaggagttaccacaataatgtcaacaa |
100 |
Q |
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| T |
2155946 |
aaccaatttttaaaaaatcaattttgatgaatgtgagaaaaaatgtgtaccttcaatacaatttgagaatcataaggagttaccacaataatgtcaacaa |
2156045 |
T |
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| Q |
101 |
gagaaggtgccacagctg |
118 |
Q |
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|||||||||||||||||| |
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| T |
2156046 |
gagaaggtgccacagctg |
2156063 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 2156139 - 2156194
Alignment:
| Q |
193 |
ttcttgaagtaagataaagaatgtgacctttctcctcctttttcttcttctctgtc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2156139 |
ttcttgaagtaagataaagaatgtgacctttctcctcctttttcttcttctctgtc |
2156194 |
T |
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