View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1228_low_46 (Length: 251)

Name: NF1228_low_46
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1228_low_46
NF1228_low_46
[»] chr4 (37 HSPs)
chr4 (1-237)||(50275098-50275334)
chr4 (1-237)||(21022362-21022597)
chr4 (1-229)||(51683574-51683802)
chr4 (3-237)||(48256046-48256280)
chr4 (1-237)||(40357754-40357989)
chr4 (1-237)||(55407260-55407496)
chr4 (1-229)||(37021551-37021784)
chr4 (1-229)||(50901852-50902079)
chr4 (12-237)||(30726224-30726450)
chr4 (12-229)||(1089067-1089285)
chr4 (12-229)||(1308597-1308815)
chr4 (92-237)||(67955-68100)
chr4 (42-215)||(11050037-11050210)
chr4 (92-225)||(46436620-46436753)
chr4 (84-215)||(50023099-50023230)
chr4 (42-215)||(21537975-21538139)
chr4 (60-205)||(14315780-14315925)
chr4 (84-215)||(50030217-50030348)
chr4 (84-215)||(10752983-10753114)
chr4 (84-215)||(10966752-10966883)
chr4 (96-215)||(9892836-9892955)
chr4 (96-215)||(41798563-41798682)
chr4 (92-215)||(30704409-30704532)
chr4 (84-215)||(44679631-44679762)
chr4 (84-205)||(14297531-14297652)
chr4 (84-215)||(3184342-3184473)
chr4 (84-215)||(3185440-3185571)
chr4 (84-215)||(3185648-3185779)
chr4 (96-215)||(6181358-6181477)
chr4 (78-205)||(11083556-11083683)
chr4 (96-215)||(49090806-49090925)
chr4 (96-215)||(49165419-49165538)
chr4 (84-205)||(41933179-41933300)
chr4 (96-215)||(31422083-31422203)
chr4 (95-215)||(50193864-50193985)
chr4 (99-213)||(4719949-4720063)
chr4 (1-51)||(68070-68120)
[»] chr7 (29 HSPs)
chr7 (1-237)||(17835440-17835676)
chr7 (1-229)||(34738738-34738966)
chr7 (1-229)||(27453092-27453320)
chr7 (1-237)||(39460892-39461128)
chr7 (1-237)||(47776698-47776934)
chr7 (3-237)||(36977962-36978196)
chr7 (1-237)||(47672558-47672794)
chr7 (1-237)||(9494269-9494504)
chr7 (1-237)||(37340668-37340904)
chr7 (32-237)||(10517344-10517549)
chr7 (12-237)||(15073711-15073937)
chr7 (12-237)||(42507510-42507736)
chr7 (31-229)||(14689561-14689759)
chr7 (84-205)||(5541096-5541217)
chr7 (87-215)||(556205-556333)
chr7 (84-215)||(46740103-46740234)
chr7 (96-215)||(41880876-41880995)
chr7 (84-201)||(16675186-16675303)
chr7 (84-201)||(17649554-17649671)
chr7 (96-215)||(35609984-35610103)
chr7 (96-215)||(48403743-48403862)
chr7 (99-215)||(17741019-17741135)
chr7 (96-215)||(45257374-45257492)
chr7 (96-215)||(9370958-9371073)
chr7 (136-215)||(17465329-17465408)
chr7 (136-215)||(17587806-17587885)
chr7 (96-133)||(17462862-17462899)
chr7 (96-133)||(17590315-17590352)
chr7 (154-215)||(41734549-41734610)
[»] chr3 (39 HSPs)
chr3 (1-237)||(42165526-42165762)
chr3 (1-237)||(47073680-47073916)
chr3 (1-237)||(3976070-3976306)
chr3 (1-237)||(44230077-44230313)
chr3 (1-237)||(4007796-4008032)
chr3 (1-237)||(50963318-50963553)
chr3 (1-227)||(48563301-48563527)
chr3 (1-237)||(30255475-30255711)
chr3 (1-237)||(20917488-20917726)
chr3 (1-237)||(20926450-20926688)
chr3 (1-237)||(49195920-49196156)
chr3 (1-229)||(42756525-42756751)
chr3 (1-229)||(42805734-42805963)
chr3 (48-237)||(50216398-50216587)
chr3 (1-237)||(48889107-48889334)
chr3 (93-237)||(597122-597266)
chr3 (113-237)||(3501477-3501601)
chr3 (84-215)||(16611463-16611594)
chr3 (84-215)||(22047659-22047790)
chr3 (83-215)||(17567619-17567751)
chr3 (84-215)||(41612753-41612884)
chr3 (96-215)||(52390964-52391083)
chr3 (84-205)||(20351040-20351161)
chr3 (96-215)||(2274482-2274601)
chr3 (96-215)||(29009245-29009364)
chr3 (84-215)||(36127822-36127953)
chr3 (96-215)||(42903758-42903877)
chr3 (96-215)||(46389347-46389466)
chr3 (96-215)||(50480352-50480471)
chr3 (96-215)||(54386509-54386628)
chr3 (96-215)||(49144031-49144149)
chr3 (157-229)||(51807341-51807413)
chr3 (96-215)||(34045762-34045880)
chr3 (96-215)||(46701593-46701712)
chr3 (99-205)||(4178199-4178305)
chr3 (1-62)||(54681976-54682037)
chr3 (99-205)||(4172201-4172307)
chr3 (99-205)||(31045165-31045271)
chr3 (1-42)||(49268741-49268782)
[»] chr2 (23 HSPs)
chr2 (1-237)||(39947964-39948200)
chr2 (1-237)||(28469005-28469240)
chr2 (1-237)||(45428955-45429190)
chr2 (1-237)||(32955832-32956063)
chr2 (12-237)||(17420931-17421157)
chr2 (53-229)||(21998562-21998737)
chr2 (1-192)||(45136776-45136956)
chr2 (113-229)||(25965192-25965308)
chr2 (1-132)||(22686849-22686978)
chr2 (84-215)||(29401160-29401291)
chr2 (90-215)||(45284558-45284683)
chr2 (90-215)||(45291921-45292046)
chr2 (84-215)||(10828581-10828712)
chr2 (96-215)||(20938282-20938401)
chr2 (84-215)||(25515366-25515496)
chr2 (84-215)||(36655906-36656037)
chr2 (149-237)||(7185393-7185481)
chr2 (96-215)||(3940297-3940416)
chr2 (96-215)||(5352351-5352470)
chr2 (96-215)||(15831514-15831633)
chr2 (96-215)||(30496515-30496634)
chr2 (96-215)||(43978906-43979025)
chr2 (96-205)||(43539306-43539415)
[»] chr8 (28 HSPs)
chr8 (1-237)||(39938689-39938925)
chr8 (1-237)||(43211869-43212105)
chr8 (1-229)||(5303694-5303922)
chr8 (1-237)||(15036201-15036437)
chr8 (1-229)||(43188421-43188649)
chr8 (31-237)||(39846489-39846695)
chr8 (1-229)||(39252383-39252602)
chr8 (1-237)||(34822489-34822726)
chr8 (1-241)||(40076732-40076963)
chr8 (60-237)||(39602079-39602256)
chr8 (1-237)||(45064605-45064830)
chr8 (12-237)||(489112-489338)
chr8 (1-237)||(41249562-41249782)
chr8 (12-237)||(42485012-42485247)
chr8 (42-215)||(2984508-2984681)
chr8 (92-221)||(37327163-37327292)
chr8 (84-215)||(35552051-35552182)
chr8 (84-215)||(20857671-20857802)
chr8 (13-215)||(24249868-24250068)
chr8 (96-215)||(25095-25214)
chr8 (96-215)||(1052910-1053029)
chr8 (96-215)||(23021889-23022008)
chr8 (96-215)||(26659832-26659951)
chr8 (89-215)||(45128135-45128261)
chr8 (84-215)||(5677456-5677587)
chr8 (84-187)||(34371450-34371553)
chr8 (99-205)||(22495313-22495419)
chr8 (197-237)||(25864609-25864649)
[»] chr1 (31 HSPs)
chr1 (1-237)||(19527016-19527252)
chr1 (1-237)||(31783201-31783437)
chr1 (1-237)||(35258346-35258582)
chr1 (1-237)||(45825240-45825477)
chr1 (1-237)||(51321078-51321313)
chr1 (1-237)||(23275577-23275813)
chr1 (1-229)||(52802503-52802731)
chr1 (12-237)||(19925106-19925332)
chr1 (12-237)||(30890425-30890651)
chr1 (1-237)||(47502679-47502903)
chr1 (43-237)||(49857461-49857652)
chr1 (84-205)||(50343525-50343646)
chr1 (84-215)||(21141413-21141544)
chr1 (84-215)||(47656256-47656386)
chr1 (96-215)||(2365622-2365741)
chr1 (96-215)||(19156401-19156520)
chr1 (84-215)||(2424924-2425053)
chr1 (84-215)||(97504-97635)
chr1 (84-215)||(22524521-22524650)
chr1 (96-215)||(3731949-3732068)
chr1 (96-215)||(13639591-13639710)
chr1 (96-215)||(26876043-26876162)
chr1 (99-215)||(17514267-17514383)
chr1 (91-215)||(38127045-38127170)
chr1 (1-58)||(19526829-19526886)
chr1 (1-58)||(19524659-19524716)
chr1 (1-58)||(19524846-19524903)
chr1 (1-58)||(19525507-19525564)
chr1 (1-58)||(19526642-19526699)
chr1 (127-215)||(8474171-8474259)
chr1 (113-172)||(16243106-16243165)
[»] chr6 (13 HSPs)
chr6 (1-237)||(6320036-6320272)
chr6 (1-229)||(31769077-31769305)
chr6 (1-229)||(24088255-24088483)
chr6 (84-215)||(24722314-24722445)
chr6 (84-205)||(26423393-26423514)
chr6 (84-215)||(3501555-3501686)
chr6 (99-215)||(21600990-21601106)
chr6 (96-215)||(6201534-6201653)
chr6 (96-215)||(11688501-11688620)
chr6 (96-215)||(22301566-22301685)
chr6 (96-215)||(30829220-30829339)
chr6 (96-205)||(27617111-27617220)
chr6 (60-203)||(3381182-3381313)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-235)||(15095-15330)
[»] chr5 (18 HSPs)
chr5 (1-237)||(7757688-7757924)
chr5 (1-237)||(8579979-8580214)
chr5 (1-229)||(17658694-17658922)
chr5 (1-237)||(28877007-28877242)
chr5 (1-237)||(42941960-42942195)
chr5 (1-237)||(38968461-38968698)
chr5 (1-237)||(42537513-42537749)
chr5 (1-229)||(8701697-8701925)
chr5 (1-237)||(19228145-19228381)
chr5 (1-229)||(512245-512473)
chr5 (12-237)||(28241282-28241508)
chr5 (99-237)||(14260-14398)
chr5 (84-215)||(5197359-5197490)
chr5 (87-215)||(40624473-40624601)
chr5 (96-215)||(19040685-19040804)
chr5 (87-201)||(20422349-20422463)
chr5 (99-215)||(27673224-27673340)
chr5 (96-215)||(30705522-30705641)
[»] scaffold0293 (1 HSPs)
scaffold0293 (32-237)||(233-437)
[»] scaffold0634 (2 HSPs)
scaffold0634 (94-237)||(7782-7925)
scaffold0634 (1-49)||(7899-7947)
[»] scaffold0238 (1 HSPs)
scaffold0238 (84-214)||(18489-18619)
[»] scaffold0155 (2 HSPs)
scaffold0155 (92-194)||(10761-10863)
scaffold0155 (1-51)||(10833-10883)
[»] scaffold0877 (1 HSPs)
scaffold0877 (84-215)||(4210-4341)
[»] scaffold0007 (2 HSPs)
scaffold0007 (127-175)||(246180-246228)
scaffold0007 (100-205)||(251048-251153)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 50275334 - 50275098
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  50275334 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacatttaaccaaactataattaacatcatttctatcatttccataaccta 50275235  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50275234 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 50275135  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||| ||||||||||||||| |||||||    
T  50275134 tcaaagccacattctgatttaaacaacataggcaaca 50275098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 21022362 - 21022597
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  21022362 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataac-ta 21022460  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21022461 aactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 21022560  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  21022561 tcaaagccacattatgatttaaacaacataggcaaca 21022597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 51683802 - 51683574
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51683802 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 51683703  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51683702 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 51683603  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| ||||||||||||||||||||||    
T  51683602 tcaaagccacattatgatttaaacaacat 51683574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 48256046 - 48256280
Alignment:
Q  3 tgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaa 102  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  48256046 tgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacttaaa 48256145  T
Q  103 ctaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattc 202  Q
    ||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  48256146 ctaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgttttcatttgccaccattc 48256245  T
Q  203 aaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||| ||||||||||||||||| |||| |||||||    
T  48256246 aaagccacattatgatttaaactacataggcaaca 48256280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40357754 - 40357989
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  40357754 tttgtgtccatcataattctcgtaacttaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataac-ta 40357852  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||    
T  40357853 aactaactaaataatcaataaaattgtcattgagacattttatcaaacacttggtgtgcaaagtataaaacatattcaaactgtgttcatttgccaccat 40357952  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||  |||||||||||||||||||||| |||||||    
T  40357953 tcaaatccacattatgatttaaacaacataggcaaca 40357989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 55407260 - 55407496
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  55407260 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaacgaaactataattaacatcatttctatcatttccataaccta 55407359  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| ||| |||||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55407360 aactaactaaataatcaatataattttcaatgaggcattcgatcaaacattttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 55407459  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||||||| |||||||| |||||||    
T  55407460 tcaaagccacattatgattttaacaacataggcaaca 55407496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37021551 - 37021784
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaat-----caatatacacttaaccaaactataattaacatcattactatcatttccata 95  Q
    ||||||||||||||||||||||||||||| ||||||||||||||      ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  37021551 tttgtgtccatcataattctcgtaacctaaactaactaaaaaattaatataatatacacttaaccaaactataattaacatcatttctatcattttcata 37021650  T
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37021651 acctaaactaactaaataatcaataaaattgtcattgaagcattttatcaaacactttgtgtgcaaagtataaaagatattcaaattgtgttcatttgcc 37021750  T
Q  196 accattcaaagtcacattatgatttaaacaacat 229  Q
    ||||||||||| ||||||||||||||||||||||    
T  37021751 accattcaaagccacattatgatttaaacaacat 37021784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 50902079 - 50901852
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  50902079 tttgtgtctatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataactta 50901980  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| | |||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  ||||||    
T  50901979 aactaacta-aaaatcaataaaattgtcattgaaacattttatcaaacactttgtgtgcaaaatataaaacatattcaaattgtgttcatttaacaccat 50901881  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| |||||||||| |||||||||||    
T  50901880 tcaaagccacattatgaattaaacaacat 50901852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 30726224 - 30726450
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  30726224 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaagtataattaacatcatttctatcatttccataac-taaactaacta 30726322  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30726323 aataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcca 30726422  T
Q  210 cattatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||| |||| |||||||    
T  30726423 cattatgatttaaactacataggcaaca 30726450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 1089067 - 1089285
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  1089067 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 1089165  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  1089166 aataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcca 1089265  T
Q  210 cattatgatttaaacaacat 229  Q
    |||||| |||||||| ||||    
T  1089266 cattattatttaaactacat 1089285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 1308597 - 1308815
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  1308597 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 1308695  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  1308696 aataatcaataaaattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcca 1308795  T
Q  210 cattatgatttaaacaacat 229  Q
    |||||| |||||||| ||||    
T  1308796 cattataatttaaactacat 1308815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 68100 - 67955
Alignment:
Q  92 cataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatt 191  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  68100 cataacctaaactaactaaataatcaatataattttcattgaggcatttgatcaaacactttatgtgcaaagtataaaacatattcaaattgtgttcatt 68001  T
Q  192 tgccaccattcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||| ||||||||||| |||||||| ||||||||||||| |||||||    
T  68000 tgctaccattcaaagccacattatcatttaaacaacataggcaaca 67955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 11050037 - 11050210
Alignment:
Q  42 aatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcatttt 141  Q
    ||||||||||||||| | |||||||| ||||||||| |  | |||||||||||||||||||||||||| |||||||||| |||| ||||||| |||||||    
T  11050037 aatcaatatacactttatcaaactatcattaacatcctctccatcatttccataacctaaactaactaaataatcaatataattttcattgatgcatttt 11050136  T
Q  142 atcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattat 215  Q
    |||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||  ||||||||    
T  11050137 atcaaatactttgtgtgcaaagtatcaaacatattcaaattgtgttcatttggcaccattcaaaaccacattat 11050210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 46436753 - 46436620
Alignment:
Q  92 cataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatt 191  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46436753 cataacctaaactaactaaataatcaataaaattgccattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatt 46436654  T
Q  192 tgccaccattcaaagtcacattatgatttaaaca 225  Q
    |||||||||||| |  |||| ||| |||||||||    
T  46436653 tgccaccattcagaaccacaatatcatttaaaca 46436620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 50023099 - 50023230
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  50023099 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 50023198  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  50023199 tgttcttttgccaccattcaaaaccacattat 50023230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 21537975 - 21538139
Alignment:
Q  42 aatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcatttt 141  Q
    ||||||||||||||| | |||||||||||||||||||         |||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  21537975 aatcaatatacactttatcaaactataattaacatca---------tttccataacctaaactaactaaataatcaatataattatcattgaggcatttt 21538065  T
Q  142 atcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattat 215  Q
    |||||||||||||||||||||| || ||||| |||||||||||||||||||| || ||||||||  ||||||||    
T  21538066 atcaaacactttgtgtgcaaagtatcaaacagattcaaattgtgttcatttggcatcattcaaaaccacattat 21538139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 14315925 - 14315780
Alignment:
Q  60 caaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc 159  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||  |||||||||| |||| |||||  |||||||| |||||||||||| ||||    
T  14315925 caaactataattaacatcatttcaatcatttccataacctaaactaactcaataatcaatacaattttcatttgggcattttgtcaaacactttgcgtgc 14315826  T
Q  160 aaagcataaaacatattcaaattgtgttcatttgccaccattcaaa 205  Q
    |||| |||||||||| ||||| |||||||||||| |||||||||||    
T  14315825 aaagtataaaacatactcaaaatgtgttcatttggcaccattcaaa 14315780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 50030217 - 50030348
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  50030217 atcatatccataacctaaactaactaaataatcagtaaaattgtcattgatgcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 50030316  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  50030317 tgttcttttgccaccattcaaaaccacattat 50030348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 10752983 - 10753114
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    |||||||| |||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||  |    
T  10752983 atcatttcaataacctaaactaattaaataatcaatataattatcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatatttaaagag 10753082  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||| ||||||||||||||||||  ||||||||    
T  10753083 tgtccatttgccaccattcaaaaccacattat 10753114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 10966752 - 10966883
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    |||||||| |||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||  |    
T  10966752 atcatttcaataacctaaactaattaaataatcaatataattatcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatatttaaagag 10966851  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||| ||||||||||||||||||  ||||||||    
T  10966852 tgtccatttgccaccattcaaaaccacattat 10966883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 9892836 - 9892955
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||||||    
T  9892836 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgcc 9892935  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  9892936 accattcaaaaccacattat 9892955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 41798563 - 41798682
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||| ||||||||| |||||||||||| ||||| ||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  41798563 accttaactaactaaataatcaataaatttgtcgttgacacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgct 41798662  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  41798663 accattcaaacccacattat 41798682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 30704532 - 30704409
Alignment:
Q  92 cataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatt 191  Q
    |||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| || ||||||| | ||| ||||||| ||    
T  30704532 cataacctaaactaactaaataatcaataaaattgtcattgagatattttatcaaacactttgtgtgcaaagtatcaaacatactaaaaatgtgttcttt 30704433  T
Q  192 tgccaccattcaaagtcacattat 215  Q
    | |||||||||||| | |||||||    
T  30704432 tcccaccattcaaaattacattat 30704409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 44679631 - 44679762
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| || ||||||||||||||||| ||||||||| |||| ||||||||  |||||||||||||||||||||||||||  || ||||||| ||||| ||    
T  44679631 atcatatctataacctaaactaactaaataatcaatgaaatggtcattgaaacattttatcaaacactttgtgtgcaaaatatcaaacatactcaaaatg 44679730  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| |||||||||||||||| |||||||||    
T  44679731 tgttcttttgccaccattcaaaatcacattat 44679762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 14297652 - 14297531
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    |||||||||||||||||||||||||  |||||||||| |||| |||||  |||||||| |||||||||||| |||||||| |||||||||| ||||| ||    
T  14297652 atcatttccataacctaaactaactcaataatcaatacaattttcatttgggcattttgtcaaacactttgcgtgcaaagtataaaacatactcaaaatg 14297553  T
Q  184 tgttcatttgccaccattcaaa 205  Q
    |||||||||| |||||||||||    
T  14297552 tgttcatttggcaccattcaaa 14297531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 3184473 - 3184342
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||||||| |||||||||| ||||  ||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||| ||||| ||    
T  3184473 atcatatccataacccaaactaactaaataaaaaataaaattgtcattgaggcattttctcaaacactttgggtgcaaagtatcaaacatactcaaaatg 3184374  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    || || ||||||||||||||||  ||||||||    
T  3184373 tgatcttttgccaccattcaaaaccacattat 3184342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 3185440 - 3185571
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||||||| |||||||||| ||||  ||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||| ||||| ||    
T  3185440 atcatatccataacccaaactaactaaataaaaaataaaattgtcattgaggcattttctcaaacactttgggtgcaaagtatcaaacatactcaaaatg 3185539  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    || || ||||||||||||||||  ||||||||    
T  3185540 tgatcttttgccaccattcaaaaccacattat 3185571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 3185648 - 3185779
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||||||| |||||||||| ||||  ||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||| ||||| ||    
T  3185648 atcatatccataacccaaactaactaaataaaaaataaaattgtcattgaggcattttctcaaacactttgggtgcaaagtatcaaacatactcaaaatg 3185747  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    || || ||||||||||||||||  ||||||||    
T  3185748 tgatcttttgccaccattcaaaaccacattat 3185779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 6181358 - 6181477
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  6181358 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 6181457  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  6181458 accaatcaaaaccacattat 6181477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 11083556 - 11083683
Alignment:
Q  78 attactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattc 177  Q
    ||||| ||||||| |||||||||||||||||  ||||||| || |||| |||||  |||||||| |||||||||||||||||||||||| ||||||| ||    
T  11083556 attaccatcattttcataacctaaactaactcaataatcagtacaattttcatttgggcattttgtcaaacactttgtgtgcaaagcatcaaacatactc 11083655  T
Q  178 aaattgtgttcatttgccaccattcaaa 205  Q
    ||| |||||||||||| |||||||||||    
T  11083656 aaaatgtgttcatttgacaccattcaaa 11083683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 49090925 - 49090806
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  49090925 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 49090826  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  49090825 accaatcaaaaccacattat 49090806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 49165538 - 49165419
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||  || ||||||| ||||| ||||||  ||||||    
T  49165538 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaactatcaaacatactcaaaatgtgttattttgcc 49165439  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  49165438 accattcaaaaccacattat 49165419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 41933179 - 41933300
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||||||||||| |||||||||||  |||||||||| |||| |||||| ||| |||||||||||||||||||||||||| || ||||||||||||||      
T  41933179 atcatttccataatctaaactaactcaataatcaatataattttcattggggctttttatcaaacactttgtgtgcaaagtatcaaacatattcaaataa 41933278  T
Q  184 tgttcatttgccaccattcaaa 205  Q
    | |||||||| |||||||||||    
T  41933279 tcttcatttgacaccattcaaa 41933300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 31422203 - 31422083
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttat-caaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgc 194  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||| || ||||||| ||||| ||||||  |||||    
T  31422203 acctaaactaactaaataatcaataaaattgtcattgacacattttattcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgc 31422104  T
Q  195 caccattcaaagtcacattat 215  Q
    ||||| |||||  ||||||||    
T  31422103 caccaatcaaaaccacattat 31422083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 50193985 - 50193864
Alignment:
Q  95 aacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtg-ttcatttg 193  Q
    |||||||||||| || |||||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||| ||||| |||| ||  ||||    
T  50193985 aacctaaactaagtaaataatcaataaaattgtcattgagacattttatcaaacactttatgtgcaaagtatcaaacatactcaaaatgtgttttttttg 50193886  T
Q  194 ccaccattcaaagtcacattat 215  Q
    |||| |||||||  ||||||||    
T  50193885 ccactattcaaaaccacattat 50193864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 4719949 - 4720063
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    |||||||| || |||||||||  |||| |||||  |||||||| ||||||||||||||||||||| || ||||||||||  |||||||| ||||| ||||    
T  4719949 taaactaagtaaataatcaatgcaattttcatttgggcattttgtcaaacactttgtgtgcaaagtatcaaacatattctcattgtgttaatttgacacc 4720048  T
Q  199 attcaaagtcacatt 213  Q
    ||||||| |||||||    
T  4720049 attcaaaatcacatt 4720063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 68120 - 68070
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatata 51  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  68120 tttgtgtccatcataattctcataacctaaactaactaaataatcaatata 68070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 17835676 - 17835440
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17835676 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataaccta 17835577  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17835576 aactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 17835477  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  17835476 tcaaagccacattatgatttaaacaacataggcaaca 17835440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 34738966 - 34738738
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  34738966 tttgtgtccatcataattctcgtaacttacactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataaccta 34738867  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34738866 aactaactacataatcaataaaattgtcatcgagacattttatcaaacactttgtgagcaaagcataaaacatattcaaattgtgttcatttgccaccat 34738767  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| ||||||||||||||||||||||    
T  34738766 tcaaagccacattatgatttaaacaacat 34738738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27453092 - 27453320
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27453092 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 27453191  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    |||| |||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27453192 aactgactaaataatcaataaaattgtcaatgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 27453291  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| ||||||||||||||||||||||    
T  27453292 tcaaagccacattatgatttaaacaacat 27453320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39461128 - 39460892
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||    
T  39461128 tttgtgtccatcataattcttgtaacctaaactaactaaaacatcaatatacacttaaccaaactataattaacatcatttctaccatatccataaccta 39461029  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39461028 aactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 39460929  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||||||||||||| || |||||||    
T  39460928 tcaaagccacattatgatttaaacaaaataggcaaca 39460892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47776934 - 47776698
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  47776934 tttgtgttcatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccagactataattaacatcatttctatcatttccataaccta 47776835  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  47776834 aactaactaaataatcaataaatttgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgtcaccat 47776735  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  47776734 tcaaagccacattatgatttaaacaacataggcaaca 47776698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 36978196 - 36977962
Alignment:
Q  3 tgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaa 102  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36978196 tgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaa 36978097  T
Q  103 ctaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattc 202  Q
    ||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  36978096 ctaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcatttaccaccattc 36977997  T
Q  203 aaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||||||||||||||| |||||||    
T  36977996 aaagtcacattatgatttaaacaacataggcaaca 36977962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 47672558 - 47672794
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  47672558 tttgtgtccatcataattctcataacctaaactaactagaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataaccta 47672657  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47672658 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 47672757  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  47672758 tcaaagccacattatgatttaaacaacataggcaaca 47672794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9494269 - 9494504
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  9494269 tttgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatt-ccataaccta 9494367  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9494368 aactaactaaataatcaatataattttcattgacgcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 9494467  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  9494468 tcaaagccacattatgatttaaacaacataggcaaca 9494504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37340904 - 37340668
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  37340904 tttgtgtccatcataattctcataacctaaactaactaacaaattaatatactcttaaccaaactataattaacagcatttctatcatttccataaccta 37340805  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37340804 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 37340705  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  37340704 tcaaagccacattatgatttaaacaacataggcaaca 37340668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 10517549 - 10517344
Alignment:
Q  32 ctaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcatt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10517549 ctaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataacctaaactaactaaataatcaataaaattgtcatt 10517450  T
Q  132 gaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacattg 231  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  10517449 gagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacatag 10517350  T
Q  232 gcaaca 237  Q
    ||||||    
T  10517349 gcaaca 10517344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 15073711 - 15073937
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  15073711 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 15073809  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  15073810 aataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcca 15073909  T
Q  210 cattatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||| |||| |||||||    
T  15073910 cattatgatttaaactacataggcaaca 15073937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 42507510 - 42507736
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  42507510 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 42507608  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  42507609 aataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcca 42507708  T
Q  210 cattatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||| |||| |||||||    
T  42507709 cattatgatttaaactacataggcaaca 42507736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 14689561 - 14689759
Alignment:
Q  31 actaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcat 130  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||||||||| |||||||||| |||| ||||    
T  14689561 actaactaaataatcaatatacacttaaccaaacaataattaacatcatttttatcatttccataacataaactaactaaataatcaatataattttcat 14689660  T
Q  131 tgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacat 229  Q
    |||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||| ||||||||  ||||||| |||||||||||||    
T  14689661 tgaggcatttgatcaaacactttgtatgcaaagtataaaagatattcaaattgtgtttatttgccactattcaaagctacattatcatttaaacaacat 14689759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 5541096 - 5541217
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| ||||| |     
T  5541096 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacaatttgtgtgcaaagtatcaaacatactcaaaata 5541195  T
Q  184 tgttcatttgccaccattcaaa 205  Q
    || || ||||||||||||||||    
T  5541196 tgatcttttgccaccattcaaa 5541217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 556205 - 556333
Alignment:
Q  87 atttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgt 186  Q
    |||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| ||||| | |||    
T  556205 attttcataacataaactaactaaataataaataaaattgtcattgaggcattttatcaaacactttgtatgcaaagtatcaaacatactcaaaatatgt 556304  T
Q  187 tcatttgccaccattcaaagtcacattat 215  Q
    |||||||||||||||||||  ||||||||    
T  556305 tcatttgccaccattcaaaaccacattat 556333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 46740103 - 46740234
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||| ||||||||||| || |||||||||||||||||||||||  ||||||||||| |||||||||||||||| || ||||||| ||||| ||    
T  46740103 atcatatccatgacctaaactaattaaataatcaataaaattgtcattgacacattttatcaatcactttgtgtgcaaagtatcaaacatactcaaaatg 46740202  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| |||||||||||||||| |||||||||    
T  46740203 tgttcttttgccaccattcaaaatcacattat 46740234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 41880995 - 41880876
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  41880995 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 41880896  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  41880895 accattcaaaaccacattat 41880876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 16675303 - 16675186
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||| ||||| ||    
T  16675303 atcatatccataacctaaactaacaaaataatcaataaaattgtcattgagacattttattaaacactttgtgtgcaaagtatcaaacatactcaaaatg 16675204  T
Q  184 tgttcatttgccaccatt 201  Q
    | ||| ||||||||||||    
T  16675203 tattcttttgccaccatt 16675186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 17649671 - 17649554
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||| ||||| ||    
T  17649671 atcatatccataacctaaactaacaaaataatcaataaaattgtcattgagacattttattaaacactttgtgtgcaaagtatcaaacatactcaaaatg 17649572  T
Q  184 tgttcatttgccaccatt 201  Q
    | ||| ||||||||||||    
T  17649571 tattcttttgccaccatt 17649554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 35609984 - 35610103
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  35609984 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 35610083  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  35610084 accaatcaaaaccacattat 35610103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 48403862 - 48403743
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  48403862 acctaaactaactaaataatcaataaaattatcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 48403763  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  48403762 accattcaaaaccacattat 48403743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 17741019 - 17741135
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| |||||||||| |||| |||||  || ||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||    
T  17741019 taaactaactaaataatcaatataattctcatttgggaattttatcaaacactttgtgtgcaaagtatcaaacatattcaaattgtgttcatatggcacc 17741118  T
Q  199 attcaaagtcacattat 215  Q
    |||||||  ||||||||    
T  17741119 attcaaaaccacattat 17741135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 45257492 - 45257374
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||| ||    
T  45257492 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt-ttttacc 45257394  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  45257393 accattcaaaaccacattat 45257374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 9370958 - 9371073
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| ||    |||| ||||| ||||||  ||||||    
T  9370958 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtat----catactcaaaatgtgttattttgcc 9371053  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  9371054 accaatcaaaaccacattat 9371073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 17465329 - 17465408
Alignment:
Q  136 cattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattat 215  Q
    |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||||||||||||  ||||||||    
T  17465329 cattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacattat 17465408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 17587885 - 17587806
Alignment:
Q  136 cattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattat 215  Q
    |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||||||||||||  ||||||||    
T  17587885 cattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccattcaaaaccacattat 17587806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 17462862 - 17462899
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattga 133  Q
    |||||||||||||| |||||||||||||||||||||||    
T  17462862 acctaaactaactaaataatcaataaaattgtcattga 17462899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 17590352 - 17590315
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattga 133  Q
    |||||||||||||| |||||||||||||||||||||||    
T  17590352 acctaaactaactaaataatcaataaaattgtcattga 17590315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 41734610 - 41734549
Alignment:
Q  154 gtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattat 215  Q
    |||||||||| || ||||||| | ||| ||||||| |||||||||||||||| | |||||||    
T  41734610 gtgtgcaaagtatcaaacatactaaaaatgtgttcttttgccaccattcaaaattacattat 41734549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42165762 - 42165526
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  42165762 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataaccta 42165663  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  42165662 aactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaatatattcaaattgtgttcatttgccaccat 42165563  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  42165562 tcaaagccacattatgatttaaacaacataggcaaca 42165526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 47073680 - 47073916
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47073680 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 47073779  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  47073780 aactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaatatattcaaattgtgttcatttgccaccat 47073879  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||||||||||||| || |||||||    
T  47073880 tcaaagccacattatgatttaaacaatataggcaaca 47073916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3976306 - 3976070
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  3976306 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcctttatatcatttccataaccta 3976207  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3976206 aactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 3976107  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||||||||||| |||| |||||||    
T  3976106 tcaaagccacattatgatttaaactacataggcaaca 3976070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 44230313 - 44230077
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44230313 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 44230214  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |    
T  44230213 aaccaactaaataatcaataaaattgtcattgaggcattttatcaaacacattgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccgt 44230114  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||| |||||||||||| |||||||    
T  44230113 tcaaagccacattatgttttaaacaacataggcaaca 44230077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4007796 - 4008032
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||    
T  4007796 tttgtgtccatcataattcttgtaacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcctttatatcatttccataaccta 4007895  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4007896 aactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 4007995  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  4007996 tcaaagccacattatgatttaaacaacataggcaaca 4008032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 50963553 - 50963318
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  50963553 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactata-ttaacatcatttatatcatttccataaccta 50963455  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  50963454 aactaactaaataatttataaaattgtcactgaggcattttatcaaacactttgtgtgtaaagtataaaacatattcaaattgtgttcatttgccaccat 50963355  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  50963354 tcaaagccacattatgatttaaacaacataggcaaca 50963318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48563527 - 48563301
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48563527 tttgtgtccatcataattcttgtaatctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 48563428  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48563427 aactaactaaataatcaatataattttcattgaggcatttgatcaaacattttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 48563328  T
Q  201 tcaaagtcacattatgatttaaacaac 227  Q
    |||||| ||||||||||||||||||||    
T  48563327 tcaaagacacattatgatttaaacaac 48563301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30255475 - 30255711
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||     
T  30255475 tttgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccttaacctg 30255574  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| || | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30255575 aactaactaaataatcaatataaatttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 30255674  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  30255675 tcaaagccacattatgatttaaacaacataggcaaca 30255711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 20917488 - 20917726
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacac--ttaaccaaactataattaacatcattactatcatttccataacc 98  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||     
T  20917488 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacacttaaccaaactataattaacatcatttcaatcatttccataact 20917587  T
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20917588 taaactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccacc 20917687  T
Q  199 attcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||||| ||||||||||||| |||||||| |||||||    
T  20917688 attcaaagccacattatgattttaacaacataggcaaca 20917726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 20926450 - 20926688
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacac--ttaaccaaactataattaacatcattactatcatttccataacc 98  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||     
T  20926450 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacacttaaccaaactataattaacatcatttcaatcatttccataact 20926549  T
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20926550 taaactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccacc 20926649  T
Q  199 attcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||||| ||||||||||||| |||||||| |||||||    
T  20926650 attcaaagccacattatgattttaacaacataggcaaca 20926688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 49195920 - 49196156
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||    
T  49195920 tttgtgtccatcataattcttgtaagctaaactaactaaaaaatcaatatacaattaaccaaactataattaacatcatttctatcattttcataaccta 49196019  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49196020 aactaactaaataatcaatataattttcattgaagcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 49196119  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||||||| |||||||| |||||||    
T  49196120 tcaaagccacattatgattttaacaacataggcaaca 49196156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 42756751 - 42756525
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  42756751 tttgcgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataaccta 42756652  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||  |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42756651 aactaactaaataatcaat--aattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 42756554  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    ||||||  |||||||||||||||||||||    
T  42756553 tcaaagcgacattatgatttaaacaacat 42756525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 42805734 - 42805963
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaa-aatcaatatacacttaaccaaactataattaacatcattactatcatttccataacct 99  Q
    ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  42805734 tttgtgtccatcataattctcataacctaaactaactaaaaaaatcaatatacacctaatcaaactataattaacatcatttctatcatttccataacct 42805833  T
Q  100 aaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacca 199  Q
    |||||||||| |||||||||| |||| |||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42805834 aaactaactaaataatcaatataattttcattgaggcatttgatcaaacattttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccacca 42805933  T
Q  200 ttcaaagtcacattatgatttaaacaacat 229  Q
    ||||||| |||||||| |||||||||||||    
T  42805934 ttcaaagccacattatcatttaaacaacat 42805963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 50216398 - 50216587
Alignment:
Q  48 tatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaa 147  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  50216398 tatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaaccacataatcaataaaattgtcattgaagcattttatcaaa 50216497  T
Q  148 cactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  50216498 cactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaaaccacattatgatttaaacaacataggcaaca 50216587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 48889334 - 48889107
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  48889334 tttgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatt---------tccataaccta 48889244  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  48889243 aactaactaaataatcaatataattttcattgaggcctttgatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcatttaccaccat 48889144  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||||||||||||||||| |||||||    
T  48889143 tcaaagtcacattatgatttaaacaacataggcaaca 48889107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 93 - 237
Target Start/End: Complemental strand, 597266 - 597122
Alignment:
Q  93 ataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcattt 192  Q
    ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||| ||||||| |||    
T  597266 ataacctaagctaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtatcaaacataatcaaaatgtgttctttt 597167  T
Q  193 gccaccattcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  597166 gccaccattcaaagccacattatgatttaaacaacatgggcaaca 597122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 3501477 - 3501601
Alignment:
Q  113 aatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacat 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||    
T  3501477 aatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaacccacat 3501576  T
Q  213 tatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||||| |||||||    
T  3501577 tatgatttaaacaacataggcaaca 3501601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 16611594 - 16611463
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  16611594 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 16611495  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  16611494 tgttcttttgccaccattcaaaaccacattat 16611463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 22047659 - 22047790
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  22047659 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 22047758  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  22047759 tgttcttttgccaccattcaaaaccacattat 22047790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 17567619 - 17567751
Alignment:
Q  83 tatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaatt 182  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |    
T  17567619 tatcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaat 17567718  T
Q  183 gtgttcatttgccaccattcaaagtcacattat 215  Q
    |||||| |||||||||||| |||  ||||||||    
T  17567719 gtgttcttttgccaccattgaaaaccacattat 17567751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 41612884 - 41612753
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  41612884 atcatatccataaactaaactaactagataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 41612785  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  41612784 tgttcttttgccaccattcaaaaccacattat 41612753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 52390964 - 52391083
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||  ||||||    
T  52390964 acctaaactaactaaataatcaataaatttgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatattcaaattgtgttattttgcc 52391063  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  52391064 accattcaaaaccacattat 52391083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 20351161 - 20351040
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcatttt-atcaaacactttgtgtgcaaagcataaaacatattcaaatt 182  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||| ||||| |    
T  20351161 atcatatccataacctaaactaactaaataatcaataaaattgtcattgagacattttaatcaaacactttgtgtgcaaagtatcaaacatactcaaa-t 20351063  T
Q  183 gtgttcatttgccaccattcaaa 205  Q
    |||||| ||||||||||||||||    
T  20351062 gtgttcttttgccaccattcaaa 20351040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 2274482 - 2274601
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||| ||    
T  2274482 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttccc 2274581  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  2274582 accattcaaaaccacattat 2274601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 29009364 - 29009245
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  29009364 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 29009265  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  29009264 accattcaaaaccacattat 29009245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 36127953 - 36127822
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||| ||||||||||| | |||||||| ||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  36127953 atcatatccatagcctaaactaaccaaataatcaagaaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 36127854  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  36127853 tgttcttttgccaccattcaaaaccacattat 36127822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 42903758 - 42903877
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  42903758 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 42903857  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  42903858 accaatcaaaaccacattat 42903877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 46389466 - 46389347
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  46389466 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 46389367  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  46389366 accaatcaaaaccacattat 46389347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 50480352 - 50480471
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  50480352 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 50480451  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  50480452 accaatcaaaaccacattat 50480471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 54386628 - 54386509
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  54386628 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 54386529  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  54386528 accaatcaaaaccacattat 54386509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 49144031 - 49144149
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||| ||||||||| ||||||  ||||||    
T  49144031 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaa-atattcaaaatgtgttattttgcc 49144129  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  49144130 accaatcaaaaccacattat 49144149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 51807413 - 51807341
Alignment:
Q  157 tgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacat 229  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51807413 tgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacat 51807341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 34045880 - 34045762
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||| ||| ||||| ||||||  ||||||    
T  34045880 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaa-atactcaaaatgtgttattttgcc 34045782  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  34045781 accaatcaaaaccacattat 34045762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 46701593 - 46701712
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||  ||||| ||| ||  ||||||    
T  46701593 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatgctcaaaatgtcttattttgcc 46701692  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  46701693 accaatcaaaaccacattat 46701712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 4178305 - 4178199
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| ||||||||||||||| |||||  |||||||| ||||||||||||||||||||| || |||  |||||||||| | |||||||| ||||    
T  4178305 taaactaactaaataatcaataaaattttcatttgggcattttgtcaaacactttgtgtgcaaagtatcaaaagtattcaaattatcttcatttgacacc 4178206  T
Q  199 attcaaa 205  Q
    |||||||    
T  4178205 attcaaa 4178199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 54682037 - 54681976
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54682037 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 54681976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 4172307 - 4172201
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| ||||||||||||||| |||||  |||||||| ||||||||||| ||||||||| || |||  |||||||||| | |||||||  ||||    
T  4172307 taaactaactaaataatcaataaaattctcatttgggcattttgtcaaacactttttgtgcaaagtatcaaaagtattcaaattatcttcatttaacacc 4172208  T
Q  199 attcaaa 205  Q
    |||||||    
T  4172207 attcaaa 4172201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 31045165 - 31045271
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| ||||| |||  |||| |||||  |||||||| ||||||||||||||||||||| || ||||||||||| ||||||||  |||| ||||    
T  31045165 taaactaactaaataataaatgcaattctcattttggcattttgtcaaacactttgtgtgcaaagtatcaaacatattcacattgtgttattttgacacc 31045264  T
Q  199 attcaaa 205  Q
    |||||||    
T  31045265 attcaaa 31045271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49268741 - 49268782
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaa 42  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  49268741 tttgcgtccatcataattctcgtaacctaaactaactaaaaa 49268782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39948200 - 39947964
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39948200 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataaccta 39948101  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  39948100 aactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcttttgccaccat 39948001  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  39948000 tcaaagccacattatgatttaaacaacataggcaaca 39947964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28469240 - 28469005
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  28469240 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataac-ta 28469142  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28469141 aactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 28469042  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  28469041 tcaaagccacattatgatttaaacaacataggcaaca 28469005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45429190 - 45428955
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  45429190 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataac-ta 45429092  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45429091 aactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 45428992  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||||||||||| || | |||||||    
T  45428991 tcaaagccacattatgatttaaactacgtaggcaaca 45428955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 32955832 - 32956063
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  32955832 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacactta-ccaaactataattaacatcatttctatcatttccataaccta 32955930  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  32955931 aactaactaaataatcaa----attgtcattgaggcattttatcaaacactttgcgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 32956026  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||| ||||||||||||| |||||||    
T  32956027 tcaaagccacattataatttaaacaacataggcaaca 32956063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 17421157 - 17420931
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  17421157 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 17421059  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| |||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||    
T  17421058 aataatcaataaaattgtcattgagacattttatcaaacacttgatgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaaccca 17420959  T
Q  210 cattatgatttaaacaacattggcaaca 237  Q
    |||||||||||||||||||| |||||||    
T  17420958 cattatgatttaaacaacataggcaaca 17420931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 21998737 - 21998562
Alignment:
Q  53 acttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactt 152  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  21998737 acttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataaaattgtcattgagacattttatcaaacactt 21998639  T
Q  153 tgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacat 229  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21998638 tgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacat 21998562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 45136776 - 45136956
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  45136776 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacatttaaccaaactataattaacatcatttctatcatttccataaccta 45136875  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcattt 192  Q
    |||||           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  45136876 aacta-----------aataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaatatatttaaattgtgttcattt 45136956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 25965308 - 25965192
Alignment:
Q  113 aatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacat 212  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  25965308 aatcaataaaattatcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaacattcaaagccacat 25965209  T
Q  213 tatgatttaaacaacat 229  Q
    |||||||||||||||||    
T  25965208 tatgatttaaacaacat 25965192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 22686978 - 22686849
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |||    
T  22686978 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctaccatttccataa-cta 22686880  T
Q  101 aactaactacataatcaataaaattgtcattg 132  Q
    ||||||||| ||||||| | ||||||||||||    
T  22686879 aactaactaaataatcact-aaattgtcattg 22686849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 29401160 - 29401291
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  29401160 atcatatccataagctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 29401259  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  29401260 tgttcttttgccaccattcaaaaccacattat 29401291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 45284683 - 45284558
Alignment:
Q  90 tccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttca 189  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| | ||| |||||||     
T  45284683 tccataatctaaactaactaaataatcaataaaattgtcattgagccattttatcaaacactttgtgtgcaaagtatcaaacatacttaaaatgtgttct 45284584  T
Q  190 tttgccaccattcaaagtcacattat 215  Q
    ||||||||||||||||  ||||||||    
T  45284583 tttgccaccattcaaaaccacattat 45284558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 45292046 - 45291921
Alignment:
Q  90 tccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttca 189  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| | ||| |||||||     
T  45292046 tccataatctaaactaactaaataatcaataaaattgtcattgagccattttatcaaacactttgtgtgcaaagtatcaaacatacttaaaatgtgttct 45291947  T
Q  190 tttgccaccattcaaagtcacattat 215  Q
    ||||||||||||||||  ||||||||    
T  45291946 tttgccaccattcaaaaccacattat 45291921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 10828581 - 10828712
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||| ||||| ||    
T  10828581 atcatatccataacctaaactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtccaaagtatcaaacatactcaaaatg 10828680  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
     |||| |||||||| |||||||  ||||||||    
T  10828681 cgttcttttgccacaattcaaaaccacattat 10828712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 20938401 - 20938282
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||||||    
T  20938401 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgcc 20938302  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  20938301 accattcaaaaccacattat 20938282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 25515366 - 25515496
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    |||||||||||||||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |    
T  25515366 atcatttccataacctaaactaactcaataatcaatataattctcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaatcg 25515465  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    || || ||||||||||||||||  ||||||||    
T  25515466 tgctc-tttgccaccattcaaaaccacattat 25515496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 36655906 - 36656037
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  36655906 atcatatccataacctaaactaactaaataatcaataaaatgttcattgagacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 36656005  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| |||||||||||| |||  ||||||||    
T  36656006 tgttcttttgccaccattgaaaaccacattat 36656037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 7185481 - 7185393
Alignment:
Q  149 actttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  7185481 actttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaaca 7185393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 3940297 - 3940416
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  3940297 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 3940396  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  3940397 accaatcaaaaccacattat 3940416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 5352470 - 5352351
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  5352470 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 5352371  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  5352370 accaatcaaaaccacattat 5352351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 15831633 - 15831514
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||| ||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  15831633 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaagactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 15831534  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  15831533 accattcaaaaccacattat 15831514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 30496515 - 30496634
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  30496515 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 30496614  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  30496615 accaatcaaaaccacattat 30496634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 43979025 - 43978906
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  43979025 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 43978926  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  43978925 accaatcaaaaccacattat 43978906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 43539306 - 43539415
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||| || |||||||||||| || ||||||| ||||| ||||||  ||||||    
T  43539306 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaaaacattgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 43539405  T
Q  196 accattcaaa 205  Q
    |||| |||||    
T  43539406 accaatcaaa 43539415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 39938689 - 39938925
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  39938689 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataaccta 39938788  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  39938789 aactaactacataatcaataaaattgtcattgagacattttatcaaatactttgtgtgcaaagtataaaacttattcaaattgtgttcatttgccaccat 39938888  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| | |||||||||||||||||||| |||||||    
T  39938889 tcaaagccccattatgatttaaacaacataggcaaca 39938925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43212105 - 43211869
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||    
T  43212105 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaaccta 43212006  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  43212005 aactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttcccaccat 43211906  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  43211905 tcaaagccacattatgatttaaacaacataggcaaca 43211869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5303694 - 5303922
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5303694 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 5303793  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5303794 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 5303893  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| ||||||||||||||||||||||    
T  5303894 tcaaagccacattatgatttaaacaacat 5303922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15036201 - 15036437
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaaca-tcattactatcatttccataacct 99  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||||||||||| |    
T  15036201 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaaccctaatttctatcatttccataac-t 15036299  T
Q  100 aaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacca 199  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15036300 aaactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccacca 15036399  T
Q  200 ttcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  15036400 ttcaaagccacattatgatttaaacaacataggcaaca 15036437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43188649 - 43188421
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||    
T  43188649 tttgtttccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttatatcatttccataacata 43188550  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  43188549 aactaactaaataatcaataaaattgtcattgaaacattttatcaaacactttgtatgcaaagtataaaacatattcaaatcgtgttcatttgccaccat 43188450  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| ||||||||||||||||||||||    
T  43188449 tcaaagccacattatgatttaaacaacat 43188421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 39846489 - 39846695
Alignment:
Q  31 actaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcat 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39846489 actaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaactaaataatcaataaaattgtcat 39846588  T
Q  131 tgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacatt 230  Q
     ||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  39846589 ggagacagtttatcaaacactttgtgtacaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacata 39846688  T
Q  231 ggcaaca 237  Q
    |||||||    
T  39846689 ggcaaca 39846695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39252602 - 39252383
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||         |||||||||||    
T  39252602 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttgaccaaactataattaacatcatt---------tccataaccta 39252512  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  39252511 aactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtattcatttgccaccat 39252412  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| ||||||||||||||||||||||    
T  39252411 tcaaagccacattatgatttaaacaacat 39252383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34822489 - 34822726
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaa-aatcaatatacacttaaccaaactataattaacatcattactatcatttccataacct 99  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  34822489 tttgtgtccatcataattctcataacctaaactaactaaaaaaatcaatatacacttaaccaaactataattaatatcatttctatcatttccataacct 34822588  T
Q  100 aaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacca 199  Q
    |||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||   ||    
T  34822589 aaactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcagagtataaaacatatttaaattgtgttcatttgcagtca 34822688  T
Q  200 ttcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||| ||||||||||||||| |||||| |||||||    
T  34822689 ttcaaagccacattatgatttaaccaacataggcaaca 34822726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 40076732 - 40076963
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || |         ||||||    
T  40076732 tttgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattatcatcatttctgt---------aaccta 40076822  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  40076823 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaattataaaacatattcaaattgtgttcatttgccaccat 40076922  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaacagcta 241  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  40076923 tcaaagccacattatgatttaaacaacataggcaacagcta 40076963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 39602256 - 39602079
Alignment:
Q  60 caaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc 159  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39602256 caaaatataattaacatcatttctatcatttccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc 39602157  T
Q  160 aaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  39602156 aaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaacaacataggcaaca 39602079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45064830 - 45064605
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  45064830 tttgtgtccatcataattctcctaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataa-cta 45064732  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||          | |||||||||||||||||||||||||||    
T  45064731 aactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaa----------aaattcaaattgtgttcatttgccaccat 45064642  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||| |||||||||||||| |||||||    
T  45064641 tcaaagccacattaagatttaaacaacataggcaaca 45064605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 489112 - 489338
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  489112 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 489210  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| ||    
T  489211 aataatcaataaaattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatatttaaattgtgttcatttgcaaccattcaaagcca 489310  T
Q  210 cattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||| |||| |||||||    
T  489311 cattataatttaaactacataggcaaca 489338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41249562 - 41249782
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  41249562 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataaccta 41249661  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    |||||||||||||||||||||||||||||||| ||||                 ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  41249662 aactaactacataatcaataaaattgtcattgcggca----------------atgtgcaaagtataaagcatattcaaattgtgttcatttgccaccat 41249745  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  41249746 tcaaagccacattatgatttaaacaacataggcaaca 41249782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 42485012 - 42485247
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttc---------cataaccta 100  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||         |||||| ||    
T  42485012 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttctatcatttccataac-ta 42485110  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42485111 aactaactaaataatcaataaaattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 42485210  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||| |||||||| |||| |||||||    
T  42485211 tcaaagccacattataatttaaactacataggcaaca 42485247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 42 - 215
Target Start/End: Complemental strand, 2984681 - 2984508
Alignment:
Q  42 aatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcatttt 141  Q
    ||||||||||||||| | |||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  2984681 aatcaatatacactttatcaaactataattaacatcattttcatcatttccataacctaaactaactaaataatcaatataattgtcgttgaggcatttt 2984582  T
Q  142 atcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattat 215  Q
    |||||||||||||||||||||| || |||| ||||||||||||||| ||||| || ||||||||  ||||||||    
T  2984581 atcaaacactttgtgtgcaaagtatgaaacttattcaaattgtgtttatttggcatcattcaaaaccacattat 2984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 37327292 - 37327163
Alignment:
Q  92 cataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatt 191  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37327292 cataacctaaactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatt 37327193  T
Q  192 tgccaccattcaaagtcacattatgattta 221  Q
    |||||||||||||| ||||||||| |||||    
T  37327192 tgccaccattcaaaatcacattatcattta 37327163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 35552182 - 35552051
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  35552182 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 35552083  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  35552082 tgttcttttgccaccattcaaaaccacattat 35552051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 20857802 - 20857671
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| ||||| ||    
T  20857802 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacaatttgtgtgcaaagtatcaaacatactcaaaatg 20857703  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||| ||||||||||  ||||||||    
T  20857702 tgttcttttgcaaccattcaaaaccacattat 20857671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 24250068 - 24249868
Alignment:
Q  13 ataattctcgtaacctacactaacta-------aaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaacta 105  Q
    ||||||||| ||||||||||||||||       || ||||||||||||||| | ||||||| |||||||         |||||||||||||||||||||     
T  24250068 ataattctcataacctacactaactaaataatcaataatcaatatacactttatcaaactaaaattaac---------atcatttccataacctaaactg 24249978  T
Q  106 actacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaa 205  Q
    |||| |||||||||| |||| |||||| |||||||||||||| ||||| ||||||||| || ||||||||||||| |||| ||||||| |||||||||||    
T  24249977 actaaataatcaatataattctcattggggcattttatcaaatactttatgtgcaaagtatcaaacatattcaaaatgtgctcatttgacaccattcaaa 24249878  T
Q  206 gtcacattat 215  Q
      ||||||||    
T  24249877 accacattat 24249868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 25095 - 25214
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  25095 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 25194  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  25195 accaatcaaaaccacattat 25214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 1053029 - 1052910
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  1053029 acctaaactaactaaataatcaataaaattgtcattgatacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 1052930  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  1052929 accaatcaaaaccacattat 1052910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 23021889 - 23022008
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  23021889 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 23021988  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  23021989 accaatcaaaaccacattat 23022008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 26659951 - 26659832
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  26659951 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 26659852  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  26659851 accaatcaaaaccacattat 26659832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 45128261 - 45128135
Alignment:
Q  89 ttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttc 188  Q
    ||||||||||||||||||||  |||||||||| ||||  ||||| |||||||||||||||||||||||||||||| || ||||||| |||||  ||||||    
T  45128261 ttccataacctaaactaactcaataatcaatacaattcacattggggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaacgtgttc 45128162  T
Q  189 atttgccaccattcaaagtcacattat 215  Q
     ||||||||||||||||  ||||||||    
T  45128161 ttttgccaccattcaaaaccacattat 45128135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 5677587 - 5677456
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||||||||||||||||||| |||  |||||||||| |||| |||||| |||||||||||||||||||| |||||||| ||| ||||||| ||||| ||    
T  5677587 atcatttccataacctaaacttactcgataatcaatataattttcattggggcattttatcaaacactttctgtgcaaaacatcaaacatactcaaaatg 5677488  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    | ||| ||||| ||||||||||  ||||||||    
T  5677487 tattcttttgctaccattcaaaaccacattat 5677456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 34371450 - 34371553
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  34371450 atcatatccataacctaaactaactaaataatcaaaaaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 34371549  T
Q  184 tgtt 187  Q
    ||||    
T  34371550 tgtt 34371553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 22495419 - 22495313
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    |||||||| || |||||||||  |||| |||||  |||||||||||||| |   | ||||||||| || ||||||||||  |||||||| ||||| ||||    
T  22495419 taaactaagtaaataatcaatgcaattttcatttgggcattttatcaaaaaacatttgtgcaaagtatcaaacatattctcattgtgttaatttgacacc 22495320  T
Q  199 attcaaa 205  Q
    |||||||    
T  22495319 attcaaa 22495313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 25864609 - 25864649
Alignment:
Q  197 ccattcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  25864609 ccattcaaagccacattatgatttaaacaacataggcaaca 25864649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 19527016 - 19527252
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  19527016 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataactaacatcatttctatcattttcataaccta 19527115  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  19527116 aattaactacataatcaataaaattgttattgaggcattttatcaaacactttgtgtgcaaaacataaaacatattcaaattgtgtccatttgccaccat 19527215  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  19527216 tcaaagccacattatgatttaaacaacataggcaaca 19527252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31783201 - 31783437
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||    
T  31783201 tttgtgtcaatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataatcta 31783300  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31783301 aactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 31783400  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||| ||||| |||||||    
T  31783401 tcaaagccacattatgatttaaagaacataggcaaca 31783437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 35258346 - 35258582
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  35258346 tttgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttctataaccta 35258445  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35258446 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 35258545  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  35258546 tcaaagccacattatgatttaaacaacataggcaaca 35258582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45825477 - 45825240
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45825477 tttgtgtccatcataattctcgtaacttaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 45825378  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc-aaagcataaaacatattcaaattgtgttcatttgccacca 199  Q
    || |||||| |||||||||| |||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  45825377 aattaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaaagtataaaacatattcaaattgtgttcatttgccacca 45825278  T
Q  200 ttcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||| ||||||||||||| |||||||| |||||||    
T  45825277 ttcaaagccacattatgattttaacaacataggcaaca 45825240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 51321313 - 51321078
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51321313 tttgtgtccatcataattctcataacctaaactaactaaaaa-tcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 51321215  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||    
T  51321214 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaaatataaaacatattcaaattgtgttcatttgccactat 51321115  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||||||||||||||||||||||| || |||||||    
T  51321114 tcaaagtcacattatgatttaaacaatataggcaaca 51321078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 23275577 - 23275813
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  23275577 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactata-ttaacatcatttctatcatttccataactta 23275675  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcca-cca 199  Q
    |||| |||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  23275676 aactgactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgtcaccca 23275775  T
Q  200 ttcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||||||||||||||||||||||||||| |||||||    
T  23275776 ttcaaagtcacattatgatttaaacaacataggcaaca 23275813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 52802731 - 52802503
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  52802731 tttgtgtctatcataattctcttaacctaaactaacaaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccatagccta 52802632  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||    
T  52802631 aactaactaaacaatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaagatattcaaattgtgttattttgccaccat 52802532  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    ||||| ||||||||||| |||||||||||    
T  52802531 tcaaaatcacattatgacttaaacaacat 52802503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 19925332 - 19925106
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  19925332 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 19925234  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  19925233 aataatcaataaaattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcca 19925134  T
Q  210 cattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||| |||| |||||||    
T  19925133 cattataatttaaactacataggcaaca 19925106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 30890651 - 30890425
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  30890651 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 30890553  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30890552 aataatcaataaaattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcca 30890453  T
Q  210 cattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||| |||| |||||||    
T  30890452 cattataatttaaactacataggcaaca 30890425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47502903 - 47502679
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||     
T  47502903 tttgtctccatcataattcttgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctat---------aacct- 47502814  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
      ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47502813 --ctaactaaataatcaataaaattgtcattgaggcattttaccaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 47502716  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  47502715 tcaaagccacattatgatttaaacaacataggcaaca 47502679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 49857461 - 49857652
Alignment:
Q  43 atcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcatttta 142  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |   |||||||||| |    
T  49857461 atcaatatacacttaatcaaactataattaacatcatttctatcatttccataacctaaactaactaaataatcaatataatttt---tgaggcatttga 49857557  T
Q  143 tcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||    
T  49857558 tcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattctcatttaaacaacataggcaaca 49857652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 50343525 - 50343646
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  50343525 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 50343624  T
Q  184 tgttcatttgccaccattcaaa 205  Q
    ||||| ||||||||||||||||    
T  50343625 tgttcttttgccaccattcaaa 50343646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 21141544 - 21141413
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  21141544 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 21141445  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    || || ||||||||||||||||  ||||||||    
T  21141444 tgatcttttgccaccattcaaaaccacattat 21141413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 47656386 - 47656256
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  47656386 atcatatccataacc-aaactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 47656288  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| |||||||||||||||| |||||||||    
T  47656287 tgttcttttgccaccattcaaaatcacattat 47656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 2365741 - 2365622
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||||||    
T  2365741 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgcc 2365642  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  2365641 accattcaaaaccacattat 2365622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 19156520 - 19156401
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||||||    
T  19156520 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttcttttgcc 19156421  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  19156420 accattcaaaaccacattat 19156401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 2424924 - 2425053
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||  ||||||||||    
T  2424924 atcatatccataacctaaactaaataaataatcaataaaattgttattgaggcattttatcaaacactttgtgtgcaaagtataaaac--attcaaattg 2425021  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    |||| ||||| | |||||| ||  ||||||||    
T  2425022 tgtttatttggctccattccaaaccacattat 2425053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 97504 - 97635
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||| ||||| || ||||||| ||||| ||    
T  97504 atcatatccataacctaaactaactaaataaacaataaaattatcattgaggcattttctcaaacactttgtgtacaaagtatcaaacatactcaaaatg 97603  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    || || ||||||||||||||||  ||||||||    
T  97604 tgatcttttgccaccattcaaaaccacattat 97635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 22524650 - 22524521
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||     
T  22524650 atcatatccatgatctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaac--attcaaatta 22524553  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    |||| ||||| | |||||| ||  ||||||||    
T  22524552 tgtttatttggctccattccaaaccacattat 22524521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 3731949 - 3732068
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  3731949 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 3732048  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  3732049 accaatcaaaaccacattat 3732068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 13639591 - 13639710
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  13639591 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 13639690  T
Q  196 accattcaaagtcacattat 215  Q
    || |||||||  ||||||||    
T  13639691 acaattcaaaaccacattat 13639710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 26876162 - 26876043
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  26876162 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 26876063  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  26876062 accaatcaaaaccacattat 26876043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 17514267 - 17514383
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    |||| |||||| |||||||||| |||| | |||  |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||    
T  17514267 taaattaactaaataatcaatataatttttatttgggcattttatcaaacactttgtgtgcaaagaatcaaacatattcaaattgtgttcatttggcacc 17514366  T
Q  199 attcaaagtcacattat 215  Q
    |||||||  ||||||||    
T  17514367 attcaaaaccacattat 17514383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 38127045 - 38127170
Alignment:
Q  91 ccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtg-ttca 189  Q
    |||||||||||||||||||  |||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||||| | ||| |||| ||      
T  38127045 ccataacctaaactaactaagtaatcaataaaattttcattgagacattttatcaaacactttgtgtgcaaagtatcaaacatactaaaaatgtgttttt 38127144  T
Q  190 tttgccaccattcaaagtcacattat 215  Q
    |||||||||||||||| | |||||||    
T  38127145 tttgccaccattcaaaattacattat 38127170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19526829 - 19526886
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19526829 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19526886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19524659 - 19524716
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  19524659 tttgtgtccaatataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19524846 - 19524903
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  19524846 tttgtgtccaatataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19524903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19525507 - 19525564
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  19525507 tttgtgtccaatataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19525564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19526642 - 19526699
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  19526642 tttgtgtccaatataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19526699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 8474259 - 8474171
Alignment:
Q  127 tcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattat 215  Q
    |||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  |||||||||| |||||  ||||||||    
T  8474259 tcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgccaccaatcaaaaccacattat 8474171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 16243106 - 16243165
Alignment:
Q  113 aatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaaca 172  Q
    ||||||| ||||  ||||| ||||||||||||||||||||||| ||||||  ||||||||    
T  16243106 aatcaatgaaatattcatttaggcattttatcaaacactttgtatgcaaaagataaaaca 16243165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6320036 - 6320272
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6320036 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 6320135  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6320136 aactaactaaataatcaatataattttcattgaggcatttgatcaaacgctttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 6320235  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||||||| |||||||| |||||||    
T  6320236 tcaaagccacattatgattttaacaacataggcaaca 6320272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31769305 - 31769077
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31769305 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 31769206  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  31769205 aactaactaaataatcaataaatttgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcttttgccaccat 31769106  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||  ||||||||||||||||||||||    
T  31769105 tcaaaaccacattatgatttaaacaacat 31769077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24088255 - 24088483
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||    
T  24088255 tttgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacctaatcaaactatcattaacatcatttctatcatttccataaccta 24088354  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  24088355 aactaactaaataatcaatataattttcattgagacatttgatcaaacactttgtgtacaaagtataaaacatattcaaattgtgttcatttgccaccat 24088454  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| |||||||| |||||||||||||    
T  24088455 tcaaagccacattatcatttaaacaacat 24088483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 24722445 - 24722314
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  24722445 atcatatccataacctaaactaactaaataatcaataaaattgtcattgacgcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 24722346  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| |||| |||||||||||  ||||||||    
T  24722345 tgttcttttgacaccattcaaaaacacattat 24722314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 26423514 - 26423393
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  26423514 atcatatccataacataaactaactaaataaacaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 26423415  T
Q  184 tgttcatttgccaccattcaaa 205  Q
    || || ||||||||||||||||    
T  26423414 tgatcttttgccaccattcaaa 26423393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 3501686 - 3501555
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||| || ||||||| ||||| ||    
T  3501686 atcatatccataacctaaactaactaaataaacaataaaattgtccttgaggcattttctcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 3501587  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    || || ||||||||||||||||  ||||||||    
T  3501586 tgatcttttgccaccattcaaaaccacattat 3501555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 21601106 - 21600990
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| |||||||||| |||| |||||  |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||    
T  21601106 taaactaactaaataatcaatataattctcatttgggcattttatcaaacactttgtgtgcaaagtatcaaacatattcaaattgtgttcatttgtcacc 21601007  T
Q  199 attcaaagtcacattat 215  Q
    |||||||  ||||||||    
T  21601006 attcaaaaccacattat 21600990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 6201653 - 6201534
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  6201653 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 6201554  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  6201553 accaatcaaaaccacattat 6201534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 11688620 - 11688501
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  11688620 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 11688521  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  11688520 accaatcaaaaccacattat 11688501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 22301685 - 22301566
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  22301685 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 22301586  T
Q  196 accattcaaagtcacattat 215  Q
    || |||||||  ||||||||    
T  22301585 acaattcaaaaccacattat 22301566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 30829220 - 30829339
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||||||  ||||||    
T  30829220 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttattttgcc 30829319  T
Q  196 accattcaaagtcacattat 215  Q
    |||| |||||  ||||||||    
T  30829320 accaatcaaaaccacattat 30829339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 27617220 - 27617111
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||| ||| ||| ||||||    
T  27617220 acctaaactaactaaataatcaataaatttgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtattcttttgcc 27617121  T
Q  196 accattcaaa 205  Q
    ||||||||||    
T  27617120 accattcaaa 27617111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 203
Target Start/End: Complemental strand, 3381313 - 3381182
Alignment:
Q  60 caaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc 159  Q
    |||||||||||||||||||||   |||||||||||||| |||||||| || |||||||            ||||||||||||||||| ||||||||||||    
T  3381313 caaactataattaacatcattttaatcatttccataacataaactaattaaataatca------------ttgaggcattttatcaaccactttgtgtgc 3381226  T
Q  160 aaagcataaaacatattcaaattgtgttcatttgccaccattca 203  Q
    ||   ||||||||||||||||||||||||||||| |||||||||    
T  3381225 aatatataaaacatattcaaattgtgttcatttgacaccattca 3381182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15095 - 15330
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaa-aatcaatatacacttaaccaaactataattaacatcattactatcatttccataacct 99  Q
    |||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  15095 tttgtgtccatcataattcttgtaacctaaactaaccaaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataacct 15194  T
Q  100 aaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacca 199  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15195 aaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccacca 15294  T
Q  200 ttcaaagtcacattatgatttaaacaacattggcaa 235  Q
    ||||||| |||||||||||||||||||||| |||||    
T  15295 ttcaaagccacattatgatttaaacaacataggcaa 15330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7757924 - 7757688
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||    
T  7757924 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataatttctatcatttctatcatttccataaccta 7757825  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  7757824 aactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatgttcaaattgtgttcatttgccaccat 7757725  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||  |||||||| ||||||||||||| |||||||    
T  7757724 tcaaaaccacattataatttaaacaacataggcaaca 7757688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8579979 - 8580214
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  8579979 tttgtgtccatcgtaattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataac-ta 8580077  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8580078 aactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 8580177  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||||||  ||||||||||||||||||||| |||||||    
T  8580178 tcaaagctacattatgatttaaacaacataggcaaca 8580214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 17658922 - 17658694
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17658922 tttgtgtccatcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 17658823  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  17658822 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtatgcaaagtataaaacatattcaaattgtgttcatttgccaccat 17658723  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||  ||||||||||||||||||||||    
T  17658722 tcaaaaccacattatgatttaaacaacat 17658694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28877242 - 28877007
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  28877242 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataacc-a 28877144  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  28877143 aactaactaaataatcaataaaattgtcattgagacattttatcaaacacttggtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 28877044  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||  ||||||||||||||||||| || |||||||    
T  28877043 tcaaacccacattatgatttaaacaatataggcaaca 28877007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42941960 - 42942195
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  42941960 tttgtgtccatcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccagactataattaacatcatttctatcatttccataaccta 42942059  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||    
T  42942060 aactaacta-aaaatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcatttgccacaat 42942158  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| || ||||||||||||||| ||| |||||||    
T  42942159 tcaaagccatattatgatttaaacagcataggcaaca 42942195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38968698 - 38968461
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38968698 tttgtgtccatcataattcccgtaacctaaactaaccaaaaaaacaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 38968599  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38968598 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 38968499  T
Q  201 tca-aagtcacattatgatttaaacaacattggcaaca 237  Q
    ||| ||||||||||||||||| |||||||| |||||||    
T  38968498 tcataagtcacattatgattttaacaacataggcaaca 38968461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42537749 - 42537513
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42537749 tttgtgttcatcataattctcgtaaccttaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataaccta 42537650  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| || | |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  42537649 aactaactaaataatcaatataaatttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcatttgccaccat 42537550  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| ||||||||||||| |||||||| |||||||    
T  42537549 tcaaagccacattatgattttaacaacataggcaaca 42537513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8701697 - 8701925
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  8701697 tttgtgtccatcataattttcataacctaaactaactaaacaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataaccta 8701796  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||| ||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8701797 aacaaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 8701896  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| ||||||||||||||||||||||    
T  8701897 tcaaagccacattatgatttaaacaacat 8701925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 19228145 - 19228381
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| |||||||||    
T  19228145 tttgtgtctatcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttttatcattttcataaccta 19228244  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  19228245 aactaactaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcatttgccaccat 19228344  T
Q  201 tcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||||||||||||||||| |||||||    
T  19228345 tcaaagccacattatgatttaaacaacataggcaaca 19228381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 512245 - 512473
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataaccta 100  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||    
T  512245 tttgtatccatcataattctcataacctaaactaactaaaaaatcaatatacacttaactaaactataattaacatcatttctataattttcataaccta 512344  T
Q  101 aactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccat 200  Q
    ||||||||| |||| ||||| |||| ||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  512345 aactaactaaataagcaatataattttcattgaggtatttgatcaaacactttgggtgcaaagtataaaacatattcaaattgtgttcatttgccaccat 512444  T
Q  201 tcaaagtcacattatgatttaaacaacat 229  Q
    |||||| ||||||||||||||||||||||    
T  512445 tcaaagccacattatgatttaaacaacat 512473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 28241282 - 28241508
Alignment:
Q  12 cataattctcgt--aacctacactaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaacta 109  Q
    ||||||||||||  |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  28241282 cataattctcgtgtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaacta 28241380  T
Q  110 cataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtca 209  Q
     |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  28241381 aataatcaataaaattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagcca 28241480  T
Q  210 cattatgatttaaacaacattggcaaca 237  Q
    |||||| |||||||| |||| |||||||    
T  28241481 cattataatttaaactacataggcaaca 28241508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 14260 - 14398
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14260 taaactaactaaataatcaataaaattatcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccacc 14359  T
Q  199 attcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  14360 attcaaagccacattatgatttaaacaacataggcaaca 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 5197490 - 5197359
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||    
T  5197490 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 5197391  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| ||||||||||||||||  ||||||||    
T  5197390 tgttcttttgccaccattcaaaaccacattat 5197359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 40624473 - 40624601
Alignment:
Q  87 atttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgt 186  Q
    |||| ||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40624473 attttcataatctaaactaactaaataatcaataaaattgttattaaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgt 40624572  T
Q  187 tcatttgccaccattcaaagtcacattat 215  Q
    ||||||| |||||||||||  ||||||||    
T  40624573 tcatttgtcaccattcaaaaccacattat 40624601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 19040685 - 19040804
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19040685 acctaaactaactaaataatcaataaatttgtcattgacacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcatttgcc 19040784  T
Q  196 accattcaaagtcacattat 215  Q
    ||||||||||  ||||||||    
T  19040785 accattcaaacccacattat 19040804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 20422463 - 20422349
Alignment:
Q  87 atttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgt 186  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||| |||||    
T  20422463 atttccataacctaaactaactaaataatcaaaataattgtcattggggcattttatcaaacactttgtgtgaaaagtatcaaacatattcaaaatgtgt 20422364  T
Q  187 tcatttgccaccatt 201  Q
    ||||||| |||||||    
T  20422363 tcatttggcaccatt 20422349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 27673224 - 27673340
Alignment:
Q  99 taaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacc 198  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||  || ||||||| ||||| ||||||| |||||||||    
T  27673224 taaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaaatatcaaacatactcaaaatgtgttcttttgccacc 27673323  T
Q  199 attcaaagtcacattat 215  Q
    |||||||  ||||||||    
T  27673324 attcaaaaccacattat 27673340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 30705641 - 30705522
Alignment:
Q  96 acctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgcc 195  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||  || ||||||| | ||| ||||||| ||||||    
T  30705641 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaaatatcaaacatactaaaaatgtgttcttttgcc 30705542  T
Q  196 accattcaaagtcacattat 215  Q
    |||||| |||  ||||||||    
T  30705541 accattgaaaaccacattat 30705522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 233 - 437
Alignment:
Q  32 ctaactaaaaaatcaatatacacttaaccaaactataattaacatcattactatcatttccataacctaaactaactacataatcaataaaattgtcatt 131  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||| |||||||||||||||    
T  233 ctaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcattttcataac-taaactaactaaataattaataaaattgtcatt 331  T
Q  132 gaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccaccattcaaagtcacattatgatttaaacaacattg 231  Q
    ||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |    
T  332 gagacattttatcaaacacgttgtgtgcaaagtataaaacatattcaaattgtgttcatttgccaccattcaaagccacattatgatttaaactacatag 431  T
Q  232 gcaaca 237  Q
    ||||||    
T  432 gcaaca 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 7925 - 7782
Alignment:
Q  94 taacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttg 193  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  7925 taacctaaactaactaaaaaatcaataaaattgtcattgaggcattttatcaaatactttgtgtgcaaagtataaaacatattcaaattgtgttcatttg 7826  T
Q  194 ccaccattcaaagtcacattatgatttaaacaacattggcaaca 237  Q
    ||| ||||||||| |||||||||||||||||||||| |||||||    
T  7825 ccatcattcaaagccacattatgatttaaacaacataggcaaca 7782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7947 - 7899
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaata 49  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  7947 tttgtgtccataataattctcgtaacctaaactaactaaaaaatcaata 7899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 18489 - 18619
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| ||||| ||    
T  18489 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgcgtgcaaagtatcaaacatactcaaaatg 18588  T
Q  184 tgttcatttgccaccattcaaagtcacatta 214  Q
    ||||| ||||||||||||||||  |||||||    
T  18589 tgttcttttgccaccattcaaaaccacatta 18619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 10863 - 10761
Alignment:
Q  92 cataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatt 191  Q
    |||||||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  10863 cataacctaaactaactaaataatcaatataattgtcattgagacattttttcaaacactttgtgtgtaaagtataaaacatattcaaattgtgttcatt 10764  T
Q  192 tgc 194  Q
    |||    
T  10763 tgc 10761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10883 - 10833
Alignment:
Q  1 tttgtgtccatcataattctcgtaacctacactaactaaaaaatcaatata 51  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  10883 tttgtgtccatcataattctcataacctaaactaactaaataatcaatata 10833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0877 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0877
Description:

Target: scaffold0877; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 4210 - 4341
Alignment:
Q  84 atcatttccataacctaaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattg 183  Q
    ||||||| |||| ||||||||||||  |||||||||| |||| |||||| |||| |||||||||||||||||||||||| ||| ||||||| ||||| ||    
T  4210 atcattttcataccctaaactaactcaataatcaatataattctcattggggcactttatcaaacactttgtgtgcaaaacatcaaacatactcaaaatg 4309  T
Q  184 tgttcatttgccaccattcaaagtcacattat 215  Q
    ||||| |||||||||||| |||  ||||||||    
T  4310 tgttcttttgccaccattaaaaaccacattat 4341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 246228 - 246180
Alignment:
Q  127 tcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatat 175  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  246228 tcatttaggcattttatcaaacactttgggtgcaaagtataaaacatat 246180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 251048 - 251153
Alignment:
Q  100 aaactaactacataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcatttgccacca 199  Q
    ||||||| || |||||||||  |||| |||||   ||||||| |||| |||||| |||| |||  || ||||||||||  |||||||| ||||| |||||    
T  251048 aaactaagtaaataatcaatgcaattttcatttgagcattttgtcaatcactttatgtgtaaaatatcaaacatattcttattgtgttaatttgacacca 251147  T
Q  200 ttcaaa 205  Q
    ||||||    
T  251148 ttcaaa 251153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University