View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_47 (Length: 246)
Name: NF1228_low_47
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_47 |
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| [»] chr1 (12 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 9319698 - 9319476
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactctaatgaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9319698 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacatcaactctaatgaaa |
9319599 |
T |
|
| Q |
124 |
ttgaatctgaaaatgattgctctactagtttaatcgatgacgaagatgcaacaaagtctctattgatgaattctgcttaataatttctgctactttattt |
223 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9319598 |
ttgaatctgaaaattatggctctactagtttaatcgatgacgaagatgcaacaaagtctctattgatgaattctgcttaataatttctgctactttattt |
9319499 |
T |
|
| Q |
224 |
gctttcagaagtacatttatgtt |
246 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
9319498 |
actttcagaagtacatttatgtt |
9319476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 9318604 - 9318784
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactctaatgaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9318604 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactctaatgaaa |
9318703 |
T |
|
| Q |
124 |
ttgaatctgaaaatgattgctctactagtttaatcgatgacgaagatgcaacaaagtctctattgatgaattctgcttaat |
204 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9318704 |
ttgaatctgaaaatgatggctctactagtttaatcgatgacgaagatgcaacaaagtctctattgatgaattctgcttaat |
9318784 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 9350015 - 9349839
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactctaatgaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9350015 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacatcaactctaatgaaa |
9349916 |
T |
|
| Q |
124 |
ttgaatctgaaaatgattgctctactagtttaatcgatgacgaagatgcaacaaagtctctattgatgaattctgct |
200 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||| |
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|
| T |
9349915 |
ttgaatctgaaaatgatggctctactagtttaatcgacgacgaggatgcaacaaagtctctaatattgaattctgct |
9349839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 9348863 - 9349043
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactctaatgaaa |
123 |
Q |
| |
|
||||| |||||| ||||||| |||||||||||||||||||||| ||| | |||||| |||||| |||||| ||||||| || ||| |||||||||||| |
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|
| T |
9348863 |
atgctcgaaggagatattgaggatattgaaatgcctccaaagccttctctttatccagatgaaaatattcagtaagacctagaagtcgactctaatgaaa |
9348962 |
T |
|
| Q |
124 |
ttgaatctgaaaatgattgctctactagtttaatcgatgacgaagatgcaacaaagtctctattgatgaattctgcttaat |
204 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9348963 |
ttgaatctgaaaatgatggctctactagtttaatcgatgacgaagatgcaacgaagtctctattgatgaattctgcttaat |
9349043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 9255342 - 9255441
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactctaatgaaa |
123 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||| | ||| |||| ||||||||| |||||| |
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| T |
9255342 |
atgcttgaaggagatattgagaatgttgaaatgcctccaaagcctttactgtatccaaatgaaatgattcatggagatattgaagtcaactctcatgaaa |
9255441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 9433154 - 9433197
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagcc |
67 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9433154 |
atgcttgaaggagatattgaaaatattgaaatgcctccaaagcc |
9433197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 9454141 - 9454184
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagcc |
67 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
9454141 |
atgcttgaaggagatattgaaaatatggaaatgcctccaaagcc |
9454184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 9486506 - 9486549
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagcc |
67 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
9486506 |
atgcttgaaggagatattgaaaatattgaaatacctccaaagcc |
9486549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 9056357 - 9056289
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgatt |
92 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| | |||| ||||||||||| ||||||||||| |
|
|
| T |
9056357 |
atgcttgaaggagatattgaaaaccttgaaatgccttcggagccaactttgtatccagatgaaatgatt |
9056289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 8931895 - 8931824
Alignment:
| Q |
23 |
aatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattca |
94 |
Q |
| |
|
||||||||||||| |||||||| | |||||||| ||||||||||| ||| ||||||| |||||| ||||| |
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|
| T |
8931895 |
aatgcttgaaggagatattgaagacattgaaattcctccaaagccttctccatatccaactgaaattattca |
8931824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 8955817 - 8955746
Alignment:
| Q |
23 |
aatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattca |
94 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| |||||||| || ||| ||||||| |||||| ||||| |
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|
| T |
8955817 |
aatgcttgaaggagatattgaagatattgaaattcctccaaaaccttctccatatccaactgaaattattca |
8955746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 9105304 - 9105368
Alignment:
| Q |
23 |
aatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaa |
87 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| ||||| | |||||||| |||||| |
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|
| T |
9105304 |
aatgcttgaaggaaatattgaacgcatagaaatgcctccagagcccaccatgtatccagatgaaa |
9105368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 15927510 - 15927729
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactctaatgaaa |
123 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
15927510 |
atgcttgaaggagatattgagaatgttgaaatgcctccaaagccctctttgtatccaaatgaaatgattgaggaagaccttgacgtcaactctaatgaaa |
15927609 |
T |
|
| Q |
124 |
ttgaatctgaaaatgattgctctactagtttaatcgatgacgaagatgcaacaaagtctctattgatgaattctgcttaataatttctgctactttattt |
223 |
Q |
| |
|
|||||||||||||||| |||||| |||||| || ||| ||||| ||||||||||||| |||||||||||||||||||| ||||| ||||| |||| |
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| T |
15927610 |
ctgaatctgaaaatgatggctctattagtttcat---tgaataagatacaacaaagtctctgttgatgaattctgcttaatagtttctagtacttcattt |
15927706 |
T |
|
| Q |
224 |
gctttcagaagtacatttatgtt |
246 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15927707 |
gctttcagaagtacatttatgtt |
15927729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 9159388 - 9159282
Alignment:
| Q |
24 |
atgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactctaatgaaa |
123 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| || ||||| | |||||||||||| ||| |||||||||| || ||||| |||||||||| |
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|
| T |
9159388 |
atgctcgaaggaaatattgagaatattgaaatgcctccaaaaccttctttctgtccaaatgaaattattgaggaagacctagaagtcaagtctaatgaaa |
9159289 |
T |
|
| Q |
124 |
ttgaatc |
130 |
Q |
| |
|
||||||| |
|
|
| T |
9159288 |
ttgaatc |
9159282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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