View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_5 (Length: 716)
Name: NF1228_low_5
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 100 - 508
Target Start/End: Complemental strand, 32204285 - 32203884
Alignment:
| Q |
100 |
acttattcccatttcacagcctatatgtgcgagtataatgcgattaagttcgttcacttccactaaatgaagattatttagaagccacaagtattgtgta |
199 |
Q |
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| T |
32204285 |
acttattcccatttcacagcctatatgtgcaagtataatgcgattaagttcgttcacttccactaaatgaagattatttagaagccacaagtattgtgta |
32204186 |
T |
|
| Q |
200 |
atattactactagggtaatacttttatgtaatggaatctatgctacaacgaatctactttgataccacttgtttgtgttggtcacgttggagttgttaat |
299 |
Q |
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| T |
32204185 |
atattactactaggataatacttttatgtaatggaatctatgctacaacgaatctactttgataccacttgtttgtgctggtcacgttggagtcgttaat |
32204086 |
T |
|
| Q |
300 |
aagaccactttgagccttttttatttgatattctatgttaccaacccatgtatatagtagtgtgacatgccttttcaaagtcataatgtcatgcaaatta |
399 |
Q |
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| T |
32204085 |
aagaccactttgagccttttttatttgatattctatgttaccaacccatgtatatagtagtgtgacatgccttttcaaagtcacaatgtcatgcaaatta |
32203986 |
T |
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| Q |
400 |
aatattcctcaaccttttcattgtgctggtaatgtaatggccaaatgatttgcttggagaataatagggttgtactgtagtctgtatgtataatactatg |
499 |
Q |
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| T |
32203985 |
aatattcctcaaccttttcattgtgctggtaatgtaatggcc-------ttgcttggagaatgatagggttgtactgtagtctgtatgtataatactatg |
32203893 |
T |
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| Q |
500 |
attcaatac |
508 |
Q |
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| T |
32203892 |
attcaatac |
32203884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 557 - 708
Target Start/End: Complemental strand, 32203835 - 32203684
Alignment:
| Q |
557 |
cgaaatggttcatggtgttaaaaatgttatacaaatttagttctttggtttctagcatcgttaaaaacccagcataacaccttacgccgcttaataactg |
656 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203835 |
cgaaatggttcatggtgttaaaaatgttatacaaatttagttctttggtttctagcattgttaaaaacccagcataacaccttacgccgcttaataactg |
32203736 |
T |
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| Q |
657 |
tcacactgtaaattaagtttcaagtttatctctgatgaagggagactctgtg |
708 |
Q |
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|| |||| ||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
32203735 |
tcgcactttaaattaagtttcaaatttatctctgatgaagggagactatgtg |
32203684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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