View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1228_low_6 (Length: 633)
Name: NF1228_low_6
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1228_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 99 - 400
Target Start/End: Original strand, 29159908 - 29160209
Alignment:
| Q |
99 |
ccaaatataaaaactagaatgtgatgtttcaagtctaacaaaaagcaatattatcatgtaataataatgagataataattttgtcaaataaaagaatgag |
198 |
Q |
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| T |
29159908 |
ccaaatataaaaactagaatgtgatgtttcaagtctaacaaaaagcaatattatcatgtaataataatgagataataattttgtcaaataaaataatgag |
29160007 |
T |
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| Q |
199 |
ttacagtagtact-attttttataactctggctcttaaaagacttggttctattctactcactaggtaattgaaatggtaagaattgaagtttataagga |
297 |
Q |
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|||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
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| T |
29160008 |
ttacagtaatacttattttatataactctggctcttaaaagacttggttctattctacccgctaggtaattgaaatggtaagaattgaagtttacaagga |
29160107 |
T |
|
| Q |
298 |
gacaaatttaaacgggagagttgtcccactcacgttgtctttttaccttggccttgtcttctaagtttttcatataactagctaatccctctatgactca |
397 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
29160108 |
gacaaatttaaacggaagagttgtcccactcacgttgtcttttcacctttgccttgtcttctaagtttttcatataactagctaat-cctctgtgactca |
29160206 |
T |
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| Q |
398 |
ctc |
400 |
Q |
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||| |
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| T |
29160207 |
ctc |
29160209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 215 - 459
Target Start/End: Complemental strand, 35409947 - 35409708
Alignment:
| Q |
215 |
ttttataactctggctcttaaaagacttggttctattctactcactaggtaattgaaatggtaagaattgaagtttataaggagacaaatttaaacggga |
314 |
Q |
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| T |
35409947 |
ttttataactctacttcttaaaagacttggttctattatattcaataggttattgaaatggtaagaagtgaagtttataagaagacaaacttaaa-ggga |
35409849 |
T |
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| Q |
315 |
gagttgtcccactcacgttgtctttttaccttggccttgtcttctaagtttttcatataactagctaatccctctatgactcactcactccctctccggt |
414 |
Q |
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|| |||| ||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| || |
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| T |
35409848 |
gatttgttccacttacattgtcttttcaccttggccttgtcttctaagtttttctcataactagcaaatccctctatgactc----actccctctcaagt |
35409753 |
T |
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| Q |
415 |
cttcattagagctcaactcttctattatagattctagctcatttt |
459 |
Q |
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||| |||||||||||| ||||||||||||| |||||||||||| |
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| T |
35409752 |
ctttattagagctcaattcttctattataggcactagctcatttt |
35409708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 398 - 558
Target Start/End: Original strand, 29160557 - 29160709
Alignment:
| Q |
398 |
ctcactccctctccggtcttcattagagctcaactcttctattatagattctagctcattttttagtagttcctctgtgttactgtgttacttcactgag |
497 |
Q |
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| T |
29160557 |
ctcactccctctcccgtcttcattagagctcaactcttctattatagattctagctcatcttttagtagttcct--------ctgtgttacttcactggg |
29160648 |
T |
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| Q |
498 |
cttttgttacacatttctattttattttggtatgccacgccccacacttgctcttcatctc |
558 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |
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| T |
29160649 |
cttttgttacacatttctattttattttggcatgccacgccccgtacttgcgcttcatctc |
29160709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 35410009 - 35409958
Alignment:
| Q |
121 |
gatgtttcaagtctaacaaaaagcaatattatcatgtaataataatgagata |
172 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410009 |
gatgtttcaggtctaacaaaaagcaatattatcatgtaataataatgagata |
35409958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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