View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1228_low_8 (Length: 529)

Name: NF1228_low_8
Description: NF1228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1228_low_8
NF1228_low_8
[»] chr2 (12 HSPs)
chr2 (30-388)||(44410041-44410401)
chr2 (389-435)||(45139692-45139738)
chr2 (389-436)||(5276465-5276512)
chr2 (387-436)||(21471955-21472004)
chr2 (389-436)||(21471017-21471064)
chr2 (389-435)||(41042542-41042588)
chr2 (388-436)||(4479703-4479751)
chr2 (389-436)||(13134318-13134365)
chr2 (389-436)||(14573261-14573308)
chr2 (389-436)||(37547998-37548045)
chr2 (386-436)||(33433161-33433211)
chr2 (389-429)||(14574007-14574047)
[»] chr1 (22 HSPs)
chr1 (448-523)||(34716483-34716558)
chr1 (387-436)||(51988465-51988514)
chr1 (389-436)||(51987827-51987874)
chr1 (389-436)||(35616776-35616823)
chr1 (389-435)||(48869769-48869815)
chr1 (387-436)||(16270205-16270254)
chr1 (388-436)||(23440866-23440914)
chr1 (389-436)||(8560839-8560886)
chr1 (389-436)||(51974437-51974484)
chr1 (389-434)||(35615767-35615812)
chr1 (388-436)||(193849-193897)
chr1 (388-436)||(9948888-9948936)
chr1 (389-436)||(37874064-37874111)
chr1 (389-436)||(38930312-38930359)
chr1 (389-436)||(43737979-43738026)
chr1 (389-436)||(48972446-48972493)
chr1 (389-436)||(51975228-51975275)
chr1 (444-482)||(22784080-22784118)
chr1 (394-436)||(38931248-38931290)
chr1 (396-436)||(1012554-1012594)
chr1 (388-436)||(48870754-48870802)
chr1 (388-436)||(48971704-48971752)
[»] chr8 (18 HSPs)
chr8 (389-436)||(61454-61501)
chr8 (389-436)||(1365829-1365876)
chr8 (388-436)||(39254786-39254834)
chr8 (389-436)||(5034898-5034945)
chr8 (386-435)||(44752572-44752621)
chr8 (389-436)||(5035277-5035324)
chr8 (389-436)||(39255753-39255800)
chr8 (389-436)||(41859310-41859357)
chr8 (389-436)||(44751608-44751655)
chr8 (387-436)||(38023622-38023671)
chr8 (388-436)||(62241-62289)
chr8 (396-436)||(37639718-37639758)
chr8 (389-436)||(34992265-34992312)
chr8 (389-436)||(42346561-42346608)
chr8 (386-436)||(32536705-32536755)
chr8 (395-436)||(7424563-7424604)
chr8 (401-429)||(1366621-1366649)
chr8 (396-436)||(27918048-27918088)
[»] chr6 (20 HSPs)
chr6 (389-436)||(7532441-7532488)
chr6 (389-436)||(7531829-7531876)
chr6 (389-436)||(22579935-22579982)
chr6 (450-523)||(9453763-9453836)
chr6 (395-436)||(26227409-26227450)
chr6 (389-436)||(7193338-7193385)
chr6 (389-436)||(9574572-9574619)
chr6 (389-436)||(33480629-33480676)
chr6 (394-436)||(22582480-22582522)
chr6 (394-436)||(22587311-22587353)
chr6 (388-436)||(3543064-3543112)
chr6 (396-436)||(33018417-33018457)
chr6 (389-436)||(4827325-4827372)
chr6 (389-436)||(15083319-15083366)
chr6 (389-436)||(24125972-24126019)
chr6 (394-436)||(3542819-3542861)
chr6 (394-436)||(15082402-15082444)
chr6 (386-436)||(29997642-29997692)
chr6 (394-436)||(33479701-33479743)
chr6 (388-436)||(33018166-33018214)
[»] chr4 (26 HSPs)
chr4 (388-436)||(39523272-39523320)
chr4 (389-436)||(47198605-47198652)
chr4 (390-436)||(3847887-3847933)
chr4 (394-436)||(3848579-3848621)
chr4 (389-436)||(11417687-11417734)
chr4 (389-436)||(11417938-11417985)
chr4 (389-436)||(25371546-25371593)
chr4 (389-436)||(29651333-29651380)
chr4 (389-436)||(36865718-36865765)
chr4 (389-436)||(47199396-47199443)
chr4 (389-436)||(55159180-55159227)
chr4 (396-436)||(37275095-37275135)
chr4 (389-436)||(10424123-10424170)
chr4 (389-436)||(10425060-10425107)
chr4 (389-436)||(26611284-26611331)
chr4 (389-436)||(31836461-31836508)
chr4 (389-436)||(38694955-38695002)
chr4 (389-436)||(39522375-39522422)
chr4 (389-436)||(45235961-45236008)
chr4 (389-436)||(55160068-55160114)
chr4 (394-436)||(30478885-30478927)
chr4 (452-518)||(36013220-36013286)
chr4 (394-436)||(38143738-38143780)
chr4 (394-435)||(26610350-26610391)
chr4 (387-436)||(45230363-45230412)
chr4 (389-421)||(28683508-28683540)
[»] chr3 (18 HSPs)
chr3 (388-436)||(32489945-32489993)
chr3 (389-435)||(17226968-17227014)
chr3 (389-430)||(17227955-17227996)
chr3 (389-436)||(36750438-36750485)
chr3 (389-436)||(44687164-44687211)
chr3 (389-436)||(45242988-45243035)
chr3 (394-436)||(36750050-36750092)
chr3 (394-436)||(42145279-42145321)
chr3 (387-436)||(19132813-19132862)
chr3 (400-436)||(37104363-37104399)
chr3 (389-436)||(31556217-31556264)
chr3 (389-436)||(52492280-52492327)
chr3 (394-436)||(25329959-25330001)
chr3 (394-436)||(32490196-32490238)
chr3 (394-436)||(45242071-45242113)
chr3 (387-436)||(19132561-19132610)
chr3 (396-436)||(37105078-37105118)
chr3 (396-436)||(49757183-49757223)
[»] chr7 (14 HSPs)
chr7 (394-436)||(42455040-42455082)
chr7 (387-436)||(668177-668226)
chr7 (388-436)||(38779564-38779612)
chr7 (389-436)||(17145622-17145669)
chr7 (389-436)||(37468910-37468957)
chr7 (389-436)||(37469006-37469053)
chr7 (389-436)||(38072292-38072339)
chr7 (389-436)||(38778854-38778901)
chr7 (389-436)||(41194513-41194560)
chr7 (394-436)||(7677810-7677852)
chr7 (389-436)||(4261597-4261644)
chr7 (394-436)||(4261210-4261252)
chr7 (394-430)||(7677422-7677458)
chr7 (388-436)||(17145873-17145921)
[»] chr5 (17 HSPs)
chr5 (446-523)||(17766620-17766697)
chr5 (389-436)||(8204120-8204167)
chr5 (389-436)||(13654933-13654980)
chr5 (389-436)||(15184018-15184065)
chr5 (389-436)||(33002817-33002864)
chr5 (389-436)||(39950404-39950451)
chr5 (393-435)||(39167442-39167484)
chr5 (389-436)||(13655661-13655708)
chr5 (389-436)||(14553667-14553714)
chr5 (385-436)||(26688162-26688213)
chr5 (385-436)||(26957893-26957944)
chr5 (389-436)||(36626631-36626678)
chr5 (394-436)||(687349-687391)
chr5 (394-436)||(33001937-33001979)
chr5 (387-436)||(2319264-2319313)
chr5 (395-436)||(4607470-4607511)
chr5 (396-436)||(2458355-2458395)
[»] scaffold0311 (1 HSPs)
scaffold0311 (389-436)||(161-208)
[»] scaffold0136 (1 HSPs)
scaffold0136 (387-436)||(20646-20695)
[»] scaffold0041 (1 HSPs)
scaffold0041 (389-436)||(27221-27268)
[»] scaffold1037 (1 HSPs)
scaffold1037 (395-436)||(2900-2941)
[»] scaffold1031 (1 HSPs)
scaffold1031 (395-436)||(3019-3060)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 30 - 388
Target Start/End: Original strand, 44410041 - 44410401
Alignment:
Q  30 caatctacatctacgatctacatctacaatgtaaacaaatgataagtatttcaatacgtggcaatattatatatatagcactcttttgcattatgatttt 129  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44410041 caatctacatctacgatctacatctacaatgtaaacaaatgacaaatatttcaatacgtggcaatattatatatatagcactcttttgcattatgatttt 44410140  T
Q  130 ccaatgtcacattgttatannnnnnnnnnnnnnnnnnnnnnnaactcta--ctataaaagcaatattaattgttaaagaccaccctaataaagcaaaatt 227  Q
    |||||||||||||||||||                       |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44410141 ccaatgtcacattgttatatttttcttttcttttctgattttaactctatactataaaagcaatattaattgttaaaggccaccctaataaagcaaaatt 44410240  T
Q  228 tcaaaatttcttatttcaataaaatgaaattcaataaattccacgagttcaacatttaacaagtaatttcaaacaacccacccatatgcatattcatcat 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44410241 tcaaaatttcttatttcaataaaatgaaattcaataaattccacgagttcaacatttaacaagtaatttcaaacaacccacccatatgcatattcatcat 44410340  T
Q  328 aatgaaaaatattgaatttacttacagaccatcatagaaacattatttatgtgtgtataag 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44410341 aatgaaaaatattgaatttacttacagaccatcatagaaacattatttatgtgtgtctaag 44410401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 45139692 - 45139738
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaa 435  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  45139692 ggtggcatttaatttgggaaaggagacttcttttccatcatgggaaa 45139738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 5276465 - 5276512
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  5276465 ggtggcatttaacttgggaaaggagacttctttcccaccatgggaaag 5276512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 21472004 - 21471955
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  21472004 agggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 21471955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 21471017 - 21471064
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  21471017 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 21471064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 41042542 - 41042588
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaa 435  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||||    
T  41042542 ggtggcatttaatttgagaaaggaggcttctttcccaccatgggaaa 41042588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 4479751 - 4479703
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| ||||||  |||||||||||||    
T  4479751 gggtgccatttaatttgggaaaggagagttctttctcaccatgggaaag 4479703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 13134318 - 13134365
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||| ||||||    
T  13134318 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaag 13134365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 14573261 - 14573308
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| || ||| ||||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 14573308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 37547998 - 37548045
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||| ||||||||||    
T  37547998 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 37548045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 436
Target Start/End: Complemental strand, 33433211 - 33433161
Alignment:
Q  386 aagggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||| | ||||||||| ||||||||| |||||| ||||||||||||||    
T  33433211 aagggtgccgtttaatttgagaaaggagagttctttcccaccatgggaaag 33433161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 14574047 - 14574007
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccat 429  Q
    |||| ||||||||||||||||||||| |||||| |||||||    
T  14574047 ggtgccatttaatttgggaaaggagagttctttcccaccat 14574007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 448 - 523
Target Start/End: Original strand, 34716483 - 34716558
Alignment:
Q  448 gatcagattaaagaggaacacagtttttatgatagtctgtccacaccgtatcatccatcagcatgctctctgctcc 523  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||| |||||| ||||    
T  34716483 gatcagattaaagaggaacacggtttttatgatagtctatccacaccatatcatccatcaacattctctctactcc 34716558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 51988514 - 51988465
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51988514 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 51988465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 51987827 - 51987874
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51987827 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaag 51987874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 35616823 - 35616776
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  35616823 ggtggcatttaacttgggaaaggagacttctttcccaccatgggaaag 35616776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 48869769 - 48869815
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaa 435  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  48869769 ggtgacatttaacttgggaaaggagacttcttttccaccatgggaaa 48869815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 16270205 - 16270254
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  16270205 agggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 16270254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 23440914 - 23440866
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  23440914 gggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 23440866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 8560839 - 8560886
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  8560839 ggtgacatttaatttgggaaaggagacttctttcccatcatgggaaag 8560886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 51974437 - 51974484
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  51974437 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 51974484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 35615767 - 35615812
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaa 434  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||||    
T  35615767 ggtggcatttaacttggaaaaggagacttctttcccaccatgggaa 35615812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 193849 - 193897
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| |||||| |||||||| |||||    
T  193849 gggtgccatttaatttgggaaaggagagttctttcccaccatgagaaag 193897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 9948936 - 9948888
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| |||||||||| |||||||||| |||||| ||||||||||||||    
T  9948936 gggtgccatttaatttaggaaaggagagttctttcccaccatgggaaag 9948888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 37874064 - 37874111
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||| |||||||| ||||||||||| ||||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccatgggaaag 37874111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 38930312 - 38930359
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||| | ||||||| |||||||||||||    
T  38930312 ggtgtcatttaatttgggaaaggaaagttctttttcaccatgggaaag 38930359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 43738026 - 43737979
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||| ||||||||||    
T  43738026 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 43737979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 48972493 - 48972446
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||| ||||    
T  48972493 ggtgccatttaatttgggaaaggagagttctttcccaccatggaaaag 48972446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 51975275 - 51975228
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| ||||||| ||| |||||||||    
T  51975275 ggtgccatttaatttgggaaaggagagttctttttcactatgggaaag 51975228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 482
Target Start/End: Original strand, 22784080 - 22784118
Alignment:
Q  444 aaacgatcagattaaagaggaacacagtttttatgatag 482  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  22784080 aaacgatcagattaaagaggaatacagattttatgatag 22784118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 38931290 - 38931248
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||    
T  38931290 catttaatttgggaaagaagagttcttttctaccatgggaaag 38931248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 1012554 - 1012594
Alignment:
Q  396 tttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||| || ||| ||||||||||||||    
T  1012554 tttaatttgggaaaggagatttttttcccaccatgggaaag 1012594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 48870802 - 48870754
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| |||||| |||||||| ||||||| ||| ||||||||||||||    
T  48870802 gggtggaatttaacttgggaaatgagacttttttcccaccatgggaaag 48870754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 48971704 - 48971752
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| |||||| |||| ||| |||||    
T  48971704 gggtgtcatttaatttgggaaaggagagttctttcccacaatgagaaag 48971752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 61454 - 61501
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  61454 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaag 61501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 1365829 - 1365876
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaag 1365876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 39254786 - 39254834
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  39254786 gggtggcatttaatttgggaaaggagacttctttcccaccataggaaag 39254834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 5034898 - 5034945
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  5034898 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaag 5034945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 44752621 - 44752572
Alignment:
Q  386 aagggtggcatttaatttgggaaaggagacttcttttccaccatgggaaa 435  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  44752621 aagggtggcatttaacttgggaaaggagacttctttcccaccataggaaa 44752572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 5035324 - 5035277
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  5035324 ggtgccatttaatttgggaaaggagagttcttttccaccataggaaag 5035277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 39255800 - 39255753
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  39255800 ggtggcatttaacttgggaaatgagacttctttcccaccatgggaaag 39255753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 41859310 - 41859357
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  41859310 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 41859357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 44751608 - 44751655
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  44751608 ggtggcatttaacttgggaaaggagacttctttcccatcatgggaaag 44751655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 38023622 - 38023671
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||| ||||    
T  38023622 agggtgtcatttaatttgggaaaggagaattcttttccatcatggaaaag 38023671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 62289 - 62241
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||| |||||||||||||||| ||||||| ||||||    
T  62289 gggtgacatttaatttgagaaaggagacttctttcccaccataggaaag 62241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 37639718 - 37639758
Alignment:
Q  396 tttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  37639718 tttaatttgggaaaggagagttctttcccaccatgggaaag 37639758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 34992312 - 34992265
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| || ||| ||||||||||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 34992265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 42346608 - 42346561
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||| | |||||||||||| ||||||||||    
T  42346608 ggtgccatttaatttgggaaagcaaacttcttttccatcatgggaaag 42346561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 436
Target Start/End: Original strand, 32536705 - 32536755
Alignment:
Q  386 aagggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||| |||||||||| ||||| |||| |||||| ||||||||||||||    
T  32536705 aagggtgccatttaatttaggaaatgagagttctttcccaccatgggaaag 32536755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 7424604 - 7424563
Alignment:
Q  395 atttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||| ||||| |||||| ||||||||||||||||||    
T  7424604 atttaatttgagaaagaagactttttttccaccatgggaaag 7424563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 429
Target Start/End: Complemental strand, 1366649 - 1366621
Alignment:
Q  401 tttgggaaaggagacttcttttccaccat 429  Q
    |||||||||||||||||||||||||||||    
T  1366649 tttgggaaaggagacttcttttccaccat 1366621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 27918088 - 27918048
Alignment:
Q  396 tttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||| ||||||| ||| ||||||||||||||    
T  27918088 tttaatttgggaaatgagacttttttcccaccatgggaaag 27918048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 7532488 - 7532441
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  7532488 ggtggcatttaatttgggaaaggagacttctttttcaccatgggaaag 7532441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 7531829 - 7531876
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  7531829 ggtggcatttaatttgggaaaggagacttctttcctaccatgggaaag 7531876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 22579935 - 22579982
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  22579935 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaag 22579982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 523
Target Start/End: Complemental strand, 9453836 - 9453763
Alignment:
Q  450 tcagattaaagaggaacacagtttttatgatagtctgtccacaccgtatcatccatcagcatgctctctgctcc 523  Q
    |||||||||||||||| |||  ||||||||||||| ||||||||| |||||||| || |||| |||||| ||||    
T  9453836 tcagattaaagaggaagacatgttttatgatagtccgtccacaccatatcatccttctgcattctctctcctcc 9453763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 26227450 - 26227409
Alignment:
Q  395 atttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  26227450 atttaatttgggaaatgagacttcttttccaccatgggaaag 26227409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 7193338 - 7193385
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  7193338 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 7193385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 9574619 - 9574572
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaag 9574572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 33480676 - 33480629
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 33480629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 22582522 - 22582480
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  22582522 catttaatttgggaaaggagagttctttcccaccatgggaaag 22582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 22587353 - 22587311
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  22587353 catttaatttgggaaaggagagttctttcccaccatgggaaag 22587311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 3543112 - 3543064
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| || ||| ||||||||||||||    
T  3543112 gggtgccatttaatttgggaaaggagagttttttcccaccatgggaaag 3543064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 33018457 - 33018417
Alignment:
Q  396 tttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  33018457 tttaatttgggaaaggagagttctttcccaccatgggaaag 33018417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 4827372 - 4827325
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| ||||||||| ||||||||||||||||||||  |||||||||    
T  4827372 ggtggcttttaatttgagaaaggagacttcttttccattatgggaaag 4827325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 15083366 - 15083319
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| |||||||| |||||    
T  15083366 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaag 15083319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 24125972 - 24126019
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||||| || || ||| ||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaag 24126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 3542819 - 3542861
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| || ||| ||||||||||||||    
T  3542819 catttaatttgggaaaggagagttttttcccaccatgggaaag 3542861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 15082402 - 15082444
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||| |||| |||||||||| ||||||||||    
T  15082402 catttaatttgggaaatgagagttcttttccatcatgggaaag 15082444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 436
Target Start/End: Original strand, 29997642 - 29997692
Alignment:
Q  386 aagggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||||   | || ||||||||||||||||||    
T  29997642 aagggtggcatttaatttgggaaagattagtttttttccaccatgggaaag 29997692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 33479701 - 33479743
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| || ||| ||||||||||||||    
T  33479701 catttaatttgggaaaggagagttatttcccaccatgggaaag 33479743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 33018166 - 33018214
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| |||||| ||| ||| ||||||    
T  33018166 gggtgccatttaatttgggaaaggagagttctttcccatcattggaaag 33018214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 39523320 - 39523272
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  39523320 gggtgccatttaatttgggaaaggagagttcttttccaccatgggaaag 39523272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 47198605 - 47198652
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  47198605 ggtgacatttaatttgggaaaggagacttctttcccaccatgggaaag 47198652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 3847887 - 3847933
Alignment:
Q  390 gtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  3847887 gtggcatttaatttgggaaaggagacttttttcccaccatgggaaag 3847933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 3848621 - 3848579
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  3848621 catttaatttgggaaaggagacttctttcccaccatgggaaag 3848579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 11417687 - 11417734
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  11417687 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 11417734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 11417985 - 11417938
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaag 11417938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 25371593 - 25371546
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccatgagaaag 25371546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 29651380 - 29651333
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  29651380 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 29651333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 36865765 - 36865718
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaag 36865718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 47199443 - 47199396
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  47199443 ggtggcatttaatttgggaaaagagacttctttcccaccataggaaag 47199396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 55159180 - 55159227
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  55159180 ggtggtatttaatttgggaaaggagacttctttcctaccatgggaaag 55159227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 37275095 - 37275135
Alignment:
Q  396 tttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  37275095 tttaatttgggaaaggagacttctttcccaccatgagaaag 37275135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 10424123 - 10424170
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||| ||||||    
T  10424123 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaag 10424170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 10425107 - 10425060
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||| |||||||||| |||||| ||||||||||||||    
T  10425107 ggtgccatttaatttaggaaaggagagttctttcccaccatgggaaag 10425060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 26611331 - 26611284
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| || ||| ||||||||||||||    
T  26611331 ggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaag 26611284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 31836508 - 31836461
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||| ||||||||| |||||| ||||||||||||||    
T  31836508 ggtgccatttaatttgagaaaggagagttctttcccaccatgggaaag 31836461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 38695002 - 38694955
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| |||||||| |||||    
T  38695002 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaag 38694955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 39522375 - 39522422
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||| | ||||||| |||||||||||||    
T  39522375 ggtgtcatttaatttgggaaaggatagttctttttcaccatgggaaag 39522422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 45236008 - 45235961
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||||| |||||||| |||||| ||||||||||||||    
T  45236008 ggtgccatttaatttggaaaaggagagttctttcccaccatgggaaag 45235961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 55160114 - 55160068
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||    
T  55160114 ggtggcatttaatttgggaaaggagactt-tttctcaccatgggaaag 55160068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 30478927 - 30478885
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||| | |||||||||||| ||||||||||    
T  30478927 catttaatttgggaaagcaaacttcttttccatcatgggaaag 30478885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 518
Target Start/End: Original strand, 36013220 - 36013286
Alignment:
Q  452 agattaaagaggaacacagtttttatgatagtctgtccacaccgtatcatccatcagcatgctctct 518  Q
    |||||||||| |||||||  ||||||||| || |||||| ||| |||||||||||| ||| ||||||    
T  36013220 agattaaagaagaacacaaattttatgatggtatgtccagaccatatcatccatcaacattctctct 36013286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 38143780 - 38143738
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||| |||| |||||| ||||||||||||||    
T  38143780 catttaatttgggaaatgagagttctttcccaccatgggaaag 38143738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 26610350 - 26610391
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaa 435  Q
    |||||||||||||||| |||| |||||| |||||||||||||    
T  26610350 catttaatttgggaaatgagagttctttcccaccatgggaaa 26610391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 45230363 - 45230412
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| ||||||||| |||||| |||| |||||| ||||||||||||||    
T  45230363 agggtgccatttaattcgggaaaagagagttctttcccaccatgggaaag 45230412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 421
Target Start/End: Original strand, 28683508 - 28683540
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttt 421  Q
    |||||||||||||||||| ||||||||||||||    
T  28683508 ggtggcatttaatttggggaaggagacttcttt 28683540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 32489945 - 32489993
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  32489945 gggtgccatttaatttgggaaaggagaattcttttccaccatgggaaag 32489993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 17226968 - 17227014
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaa 435  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  17226968 ggtggcatttaatttgggaaaggagatttctttcccaccatgggaaa 17227014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 17227996 - 17227955
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatg 430  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  17227996 ggtggcatttaatttgggaaaggagacttctttcccaccatg 17227955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 36750485 - 36750438
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  36750485 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 36750438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 44687211 - 44687164
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  44687211 ggtgccatttaatttgggaaaggagaattcttttccaccatggaaaag 44687164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 45243035 - 45242988
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  45243035 ggtgccatttaatttgggaaagaagagttcttttccaccatgggaaag 45242988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 36750050 - 36750092
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  36750050 catttaatttgggaaaggagagttcttttccaccatggaaaag 36750092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 42145321 - 42145279
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  42145321 catttaatttgggaaaggagactttttttccaccataggaaag 42145279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 19132862 - 19132813
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| ||||||||||||||||||| | |||||| ||||||||||||||    
T  19132862 agggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaag 19132813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 37104363 - 37104399
Alignment:
Q  400 atttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||| ||||||||||||||||||    
T  37104363 atttgggaaaggagactttttttccaccatgggaaag 37104399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 31556264 - 31556217
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||| ||||||||||    
T  31556264 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 31556217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 52492327 - 52492280
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||||||||| |||| |||||||||||||||| ||||    
T  52492327 ggtgtcatttaatttgggaaatgagagttcttttccaccatggaaaag 52492280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 25330001 - 25329959
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||| | |||||||||||| ||||||||||    
T  25330001 catttaatttgggaaagcaaacttcttttccatcatgggaaag 25329959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 32490238 - 32490196
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||    
T  32490238 catttaatttgggaaaggagagttctttcccaccatggaaaag 32490196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 45242071 - 45242113
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||| |||| |||||||||| ||||||||||    
T  45242071 catttaatttgggaaatgagagttcttttccatcatgggaaag 45242113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 19132561 - 19132610
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| ||||||||||||||||||||| |||||| | || |||||||||    
T  19132561 agggtgccatttaatttgggaaaggagagttctttcctactatgggaaag 19132610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 37105118 - 37105078
Alignment:
Q  396 tttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||| ||||||| ||| ||||||||||||||    
T  37105118 tttaatttgggaaacgagacttttttcccaccatgggaaag 37105078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 49757223 - 49757183
Alignment:
Q  396 tttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||| ||| | ||||||||||||    
T  49757223 tttaatttgggaaaggagacttttttcctaccatgggaaag 49757183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 42455040 - 42455082
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  42455040 catttaatttgggaaaggagacttcttttctaccatgggaaag 42455082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 668177 - 668226
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  668177 agggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 668226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 38779612 - 38779564
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  38779612 gggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 38779564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 17145622 - 17145669
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 17145669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 37468910 - 37468957
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  37468910 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 37468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 37469053 - 37469006
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 37469006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 38072339 - 38072292
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||    
T  38072339 ggtgccatttaatttgggaaatgagagttcttttccaccatgggaaag 38072292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 38778854 - 38778901
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  38778854 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 38778901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 41194513 - 41194560
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  41194513 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 41194560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 7677852 - 7677810
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccatgggaaag 7677810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 4261644 - 4261597
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||| |||||||||| |||||| ||||||||||||||    
T  4261644 ggtgccatttaatttaggaaaggagagttctttcccaccatgggaaag 4261597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 4261210 - 4261252
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||| |||||||||| |||||||| ||||||||||||    
T  4261210 catttaatttaggaaaggagagttcttttctaccatgggaaag 4261252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 7677422 - 7677458
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatg 430  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  7677422 catttaatttgggaaaggagaattctttcccaccatg 7677458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 17145921 - 17145873
Alignment:
Q  388 gggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||| ||||||||||||||||||||| |||||||  || |||||||||    
T  17145921 gggtgccatttaatttgggaaaggagagttcttttttactatgggaaag 17145873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 523
Target Start/End: Original strand, 17766620 - 17766697
Alignment:
Q  446 acgatcagattaaagaggaacacagtttttatgatagtctgtccacaccgtatcatccatcagcatgctctctgctcc 523  Q
    ||||||||||| ||||||||||||  ||||||||||||||  ||||||| |||||||||| | ||| |||||| ||||    
T  17766620 acgatcagattcaagaggaacacatattttatgatagtctacccacaccatatcatccattatcattctctctcctcc 17766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 8204120 - 8204167
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  8204120 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 8204167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 13654933 - 13654980
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  13654933 ggtgacatttaatttgggaaaggagacttctttcccaccataggaaag 13654980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 15184065 - 15184018
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 15184018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 33002864 - 33002817
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  33002864 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaag 33002817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 39950404 - 39950451
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 39167484 - 39167442
Alignment:
Q  393 gcatttaatttgggaaaggagacttcttttccaccatgggaaa 435  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  39167484 gcatttaatttgggaaaggagacttctttcccatcatgggaaa 39167442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 13655708 - 13655661
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| ||||||||||| |||  |||||||||    
T  13655708 ggtggcatttaatttgggaaaagagacttctttcccattatgggaaag 13655661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 14553667 - 14553714
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||| | |||||||||||| ||||||||||    
T  14553667 ggtgccatttaatttgggaaagcaaacttcttttccatcatgggaaag 14553714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 26688162 - 26688213
Alignment:
Q  385 taagggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||| ||||||||||||||||| | |||||||| ||| ||||||||||    
T  26688162 taagggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaag 26688213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 26957893 - 26957944
Alignment:
Q  385 taagggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||| ||||||||||||||||| | |||||||| ||| ||||||||||    
T  26957893 taagggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaag 26957944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 36626678 - 36626631
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| |||||||||||||||| |||| |||||| ||||||||||||||    
T  36626678 ggtgccatttaatttgggaaatgagagttctttcccaccatgggaaag 36626631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 687391 - 687349
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||    
T  687391 catttaatttgggaaaggagagttcttttccactatggaaaag 687349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 33001937 - 33001979
Alignment:
Q  394 catttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||    
T  33001937 catttaatttgggaaaggagagttctttcccaccatggaaaag 33001979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 2319264 - 2319313
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||||||||||||  | || ||| ||||||||||||||    
T  2319264 agggtggcatttaatttgggaaaggctagttttttcccaccatgggaaag 2319313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 4607470 - 4607511
Alignment:
Q  395 atttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||||| |||||| ||| ||||||||||||||    
T  4607470 atttaatttgggaaagtagacttttttcccaccatgggaaag 4607511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 2458395 - 2458355
Alignment:
Q  396 tttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||||||||||||| ||||||| ||||||||||||| ||||    
T  2458395 tttaatttgggaaatgagactttttttccaccatggaaaag 2458355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 208 - 161
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  208 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 20646 - 20695
Alignment:
Q  387 agggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||||||||||||||| |||||  |||| ||||||||||||||||||    
T  20646 agggtggcatttaatttggaaaaggctactttttttccaccatgggaaag 20695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 27221 - 27268
Alignment:
Q  389 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    |||| ||||||||||||||||||||| |||||| ||| ||||||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 27268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 2941 - 2900
Alignment:
Q  395 atttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||| |||||||||| |||||||||| ||||||||||||    
T  2941 atttaatctgggaaaggatacttcttttctaccatgggaaag 2900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 3060 - 3019
Alignment:
Q  395 atttaatttgggaaaggagacttcttttccaccatgggaaag 436  Q
    ||||||| |||||||||| |||||||||| ||||||||||||    
T  3060 atttaatctgggaaaggatacttcttttctaccatgggaaag 3019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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