View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12290_high_1 (Length: 458)
Name: NF12290_high_1
Description: NF12290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12290_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 6609617 - 6610056
Alignment:
| Q |
1 |
catccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatctaacggtatattaattgacagtgtaaaca |
100 |
Q |
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| T |
6609617 |
catccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatccaacggtatattaattgacagtgtaaaaa |
6609716 |
T |
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| Q |
101 |
atcatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgac |
200 |
Q |
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| T |
6609717 |
ataatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgac |
6609816 |
T |
|
| Q |
201 |
aagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagac |
300 |
Q |
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| T |
6609817 |
aagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaagttgtaatagagttgagagcacacatttggagtaagaaacacaagac |
6609916 |
T |
|
| Q |
301 |
aaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaacaaagggaagttaaaatttgttgagtttaacaaaca |
400 |
Q |
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| T |
6609917 |
aaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaacaaagggaagttaaaatttgttgagtttaacaaaca |
6610016 |
T |
|
| Q |
401 |
taattagaattgtgtgtgacaataagctgtaagctgaaat |
440 |
Q |
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| T |
6610017 |
taattagaattgtgtgtgacaataagctgtaagctgaaat |
6610056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 119 - 364
Target Start/End: Original strand, 6602220 - 6602465
Alignment:
| Q |
119 |
cttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgacaagatattatttttaaca |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||| |
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| T |
6602220 |
cttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgacaagatattgtctttaaca |
6602319 |
T |
|
| Q |
219 |
attctgttcaggtttggacaagttctaatgtagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaacaaaaa |
318 |
Q |
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| T |
6602320 |
attttgttcagatttggacaagttctgttatagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaataaaaa |
6602419 |
T |
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| Q |
319 |
catgtttgttagagacacactccatgagttgaaactatgatgacaa |
364 |
Q |
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| T |
6602420 |
catgtttgttagagacacactccatgagctgaaactatgttgacaa |
6602465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 6602462 - 6602507
Alignment:
| Q |
394 |
acaaacataattagaattgtgtgtgacaataagctgtaagctgaaa |
439 |
Q |
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|||||| ||||||||| | |||||||||||||| |||||||||||| |
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| T |
6602462 |
acaaacttaattagaactttgtgtgacaataagttgtaagctgaaa |
6602507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6602115 - 6602143
Alignment:
| Q |
1 |
catccctatgtaacacaaaaatgaaataa |
29 |
Q |
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| T |
6602115 |
catccctatgtaacacaaaaatgaaataa |
6602143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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