View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12290_high_4 (Length: 326)
Name: NF12290_high_4
Description: NF12290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12290_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 39988000 - 39988302
Alignment:
| Q |
10 |
acctgtgaacaattgttttcatgaaacgttgagttgcattcttttcatctttgttttcttttctgcctctggaaatttggtttcattaactggctgccaa |
109 |
Q |
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| T |
39988000 |
acctttgaacaattgttttcatgaaacgttgagttgcattcttttcatctttgttttcttttctgcctctggaaatttggtttcattaactggctgccaa |
39988099 |
T |
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| Q |
110 |
ctatgacttgttcagtattttgagttggcatgaatggtattagaggcttctttgtgggcacagctatatttttcatacaactttcatttgaaacaggaga |
209 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39988100 |
ctatgacttgttcagtattttgagttggcaggaatggtattagaggcttctttgtgggcacagctatatttttcatacaactttcatttgaaacaggaga |
39988199 |
T |
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| Q |
210 |
ggccttctttcctttcaatggccttggaacctccaatctctccaaaatccttgaagtttccttgtctagctgtctaatgccatttcgtggtgatatactt |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39988200 |
ggccttctttcctttcgatggccttggaacctccaatctctccaaaatccttgaagtttccttgtctagctgtctaatgccatttcgtggtgatatactt |
39988299 |
T |
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| Q |
310 |
gat |
312 |
Q |
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||| |
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| T |
39988300 |
gat |
39988302 |
T |
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