View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12290_low_1 (Length: 1161)
Name: NF12290_low_1
Description: NF12290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12290_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 749; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 33 - 937
Target Start/End: Complemental strand, 5052371 - 5051458
Alignment:
| Q |
33 |
tgaagggcatccctgttatatcaccgtgcaaatttgatattaactactatatttgaaatccatattgtatattataatcaannnnnnnaacattgactag |
132 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
5052371 |
tgaagggcatccctgttatagcaccgtgcaaatttgatattaactactatatttgaaagccatattgtatattataatcaaattttttaacattgactag |
5052272 |
T |
|
| Q |
133 |
ttaagtcaatgcaaaacattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtactattgtcttcaat |
232 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
5052271 |
ttaagtcaatgcaaagcattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatctgaaaccaaggtactattgtcttaaat |
5052172 |
T |
|
| Q |
233 |
gttcactgaatattccaatccaaactcacattcctgtaaacgccttcttggcaatgtcaatactttgaacctcactatctttaagagtggcctatgaaca |
332 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |
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|
| T |
5052171 |
gttcactgaat-ttccaatccaaactcacattcctgtaaacgccttcttggcaatgtcaatacattgaacctcactgtctttgagagtggcctatgaaca |
5052073 |
T |
|
| Q |
333 |
tggcagtaagtaaagggaatgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtgattggggccgggatca |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5052072 |
tggcagtaagtaaagggaatgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtgatcggggccgggatca |
5051973 |
T |
|
| Q |
433 |
atcaagtcagcaataatacataatttaacagttgggcaaagggctatcataattgttcaactaagtatcaaaatccattatccaattaaaatttggtagg |
532 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |
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|
| T |
5051972 |
atcaagtcagcaacaatacataatttgacagttgggcaaagggctatcataattgttcaactaagtatcagaatcaattatccaatttaaatttggtagg |
5051873 |
T |
|
| Q |
533 |
taatagctcgtgaacatacaatctattagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtgtccat |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5051872 |
taatagctcgtgaacatacaatctattagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtgtccat |
5051773 |
T |
|
| Q |
633 |
acaagacaggagtgagatgcaaatccatcgcaaagcgcttct------taatctcacagctccaattcaatgaacgatcagtttttcatcaccaatatac |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
5051772 |
acaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcacagctccaattcaatgaacggccagttcttcatcaccaatatac |
5051673 |
T |
|
| Q |
727 |
tttggtccaacaaatga---aagaagaaaaccagaaaagtagcacttcaattttatctcaaagcataaactcctcgtatcgttgtcatccaatctccatc |
823 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
5051672 |
tttggtccaacaaatgaaagaagaagaaaaccagaaaagtagcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatctccatc |
5051573 |
T |
|
| Q |
824 |
tttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat-aaatcatccttatattcgaga |
922 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
5051572 |
tttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcatccttatattcgaga |
5051473 |
T |
|
| Q |
923 |
attgttggattttca |
937 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5051472 |
attgttggattttca |
5051458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 7e-80
Query Start/End: Original strand, 993 - 1152
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
993 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
1092 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
|
| Q |
1093 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
1152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 5048273 - 5048194
Alignment:
| Q |
140 |
aatgcaaaacattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtac |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | | |||| || | ||||||||||||| ||||||| |
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|
| T |
5048273 |
aatgcaaagcattaaaacatatccaaatttgatgagatcatgaccaagtcagaacagtcaaacatttgaaactaaggtac |
5048194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 5048569 - 5048513
Alignment:
| Q |
20 |
cacatcacagaagtgaagggcatccctgttatatcaccgtgcaaatttgatattaact |
77 |
Q |
| |
|
||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| |
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|
| T |
5048569 |
cacatcacaaaagtgaagggcatccctatt-taggaccgtgcaaatttgatattaact |
5048513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 279; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-155
Query Start/End: Original strand, 490 - 1152
Target Start/End: Original strand, 51273452 - 51274120
Alignment:
| Q |
490 |
caactaagtatcaaaatccattatccaattaaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggaga |
588 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| |||||||||||||| |
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|
| T |
51273452 |
caaccaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggaga |
51273551 |
T |
|
| Q |
589 |
acttatcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttctta------atctc |
681 |
Q |
| |
|
| |||||||||||| ||| ||| ||||||||||||||||| | |||||||||| |||||| |||||||||||| ||||||| |||||| ||||| |
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|
| T |
51273552 |
atttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaatctc |
51273651 |
T |
|
| Q |
682 |
acagctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatgaaagaa---gaaaaccagaaaag-tagcacttcaatttt |
777 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||| ||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||| |
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|
| T |
51273652 |
acagctccaattcattgaacgatcaattcttcatcacca---tactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaatttt |
51273748 |
T |
|
| Q |
778 |
atctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgacc |
877 |
Q |
| |
|
|||||||||| |||||| ||| | ||||| ||| | |||||| ||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| | |
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|
| T |
51273749 |
atctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatc |
51273848 |
T |
|
| Q |
878 |
ttaaactcagcaatataacaagataaat-catc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtag |
975 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
51273849 |
ctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtag |
51273948 |
T |
|
| Q |
976 |
agtctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcga |
1075 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||| |||||||||||| ||||||| || |
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|
| T |
51273949 |
agtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccgtgtactaga |
51274047 |
T |
|
| Q |
1076 |
aggcttcgtttgcgaaccttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
1152 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
|
|
| T |
51274048 |
aggctttgtttgtgaacctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 8e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 8e-55
Query Start/End: Original strand, 802 - 1033
Target Start/End: Original strand, 14907802 - 14908035
Alignment:
| Q |
802 |
tcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat |
901 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||| ||||||||||| || ||||||||| || |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
14907802 |
tcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaa |
14907901 |
T |
|
| Q |
902 |
aa-atcatc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcct |
999 |
Q |
| |
|
|| | || ||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||| || | |||||||||||||||| ||||||||||| |
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|
| T |
14907902 |
aataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcct |
14908001 |
T |
|
| Q |
1000 |
cacgaaagattggatcaaacttccactccctcca |
1033 |
Q |
| |
|
||| |||||| |||||||| |||||||||||||| |
|
|
| T |
14908002 |
cacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 559 - 676
Target Start/End: Original strand, 14907599 - 14907717
Alignment:
| Q |
559 |
tagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatc |
657 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| ||||| ||||| | ||||||| ||| |||||| | |||||| |
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|
| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
|
| Q |
658 |
catcgcaaagcgcttctta |
676 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
14907699 |
catctcaaagcgcatctta |
14907717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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